View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17293_low_10 (Length: 387)
Name: NF17293_low_10
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 108 - 310
Target Start/End: Complemental strand, 29237370 - 29237168
Alignment:
| Q |
108 |
gcatgctacaaagctttaaacgatcatcatgttctgctggaaggcacccttttgaagcctaacatggtcacccctggttcagattctccaaaggtttccc |
207 |
Q |
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| T |
29237370 |
gcatgctacaaggccttgaatgaccaccatgtcctccttgaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcac |
29237271 |
T |
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| Q |
208 |
ccgaagttatagctgagtataccgttaaagctttgcagcgaaccgttccggctgccgttcctgctgttgtgttcttatctggtggacagagtgaggagga |
307 |
Q |
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| T |
29237270 |
ccgaggttgttgctgagcacaccgttagagctttgcagagaaccgtacctgctgcagtcccagctgttgttttcttgtctggtggacagagtgaggaaga |
29237171 |
T |
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| Q |
308 |
ggc |
310 |
Q |
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||| |
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| T |
29237170 |
ggc |
29237168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 29233581 - 29233418
Alignment:
| Q |
147 |
gaaggcacccttttgaagcctaacatggtcacccctggttcagattctccaaaggtttcccccgaagttatagctgagtataccgttaaagctttgcagc |
246 |
Q |
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| T |
29233581 |
gaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcaga |
29233482 |
T |
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| Q |
247 |
gaaccgttccggctgccgttcctgctgttgtgttcttatctggtggacagagtgaggaggaggc |
310 |
Q |
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| T |
29233481 |
gaaccgtacctgctgcagtcccagctgttgttttcttatctggtgaacagagtgaggaagaggc |
29233418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 42028084 - 42028177
Alignment:
| Q |
16 |
atggcttagttcctatagtcgagcccgaaatcctcgtagatggatctcatgacatcaacaagtgtgccgaggtgactgaacgtgttctagctgc |
109 |
Q |
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| T |
42028084 |
atggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctgaggtgactgaacgtgttctggctgc |
42028177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 307
Target Start/End: Complemental strand, 26629803 - 26629589
Alignment:
| Q |
93 |
gaacgtgttctagctgcatgctacaaagctttaaacgatcatcatgttctgctggaaggcacccttttgaagcctaacatggtcacccctggttcagatt |
192 |
Q |
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||||| ||||| || ||||| ||||| ||| ||| || ||||||||||| || ||||| || |||||||||||||| ||||| || || || ||||||| |
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| T |
26629803 |
gaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaagcctaatatggttacaccaggatcagatt |
26629704 |
T |
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| Q |
193 |
ctccaaaggtttcccccgaagttatagctgagtataccgttaaagctttgcagcgaaccgttccggctgccgttcctgctgttgtgttcttatctggtgg |
292 |
Q |
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|||| || ||| | || || |||||||| | | ||||| ||| ||| | |||||||||| || || ||||||||| | || ||||| |||||||| |
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| T |
26629703 |
ctcctaaagttgctcctgaggttatagcccaacacaccgtccgagcattgttgagaaccgttcctgccgcggttcctgctatagttttcttgtctggtgg |
26629604 |
T |
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| Q |
293 |
acagagtgaggagga |
307 |
Q |
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||| ||||| ||||| |
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| T |
26629603 |
acaaagtgaagagga |
26629589 |
T |
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