View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17293_low_7 (Length: 454)

Name: NF17293_low_7
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17293_low_7
NF17293_low_7
[»] chr7 (4 HSPs)
chr7 (12-438)||(46626687-46627091)
chr7 (192-298)||(46640888-46640993)
chr7 (74-160)||(12378094-12378181)
chr7 (12-152)||(34232566-34232707)
[»] chr4 (3 HSPs)
chr4 (12-160)||(7662434-7662583)
chr4 (41-152)||(23279697-23279809)
chr4 (12-73)||(3129190-3129251)
[»] chr3 (5 HSPs)
chr3 (12-160)||(30166449-30166598)
chr3 (179-372)||(18380165-18380346)
chr3 (12-112)||(46907845-46907945)
chr3 (48-132)||(21739643-21739727)
chr3 (377-410)||(18379964-18379997)
[»] chr2 (3 HSPs)
chr2 (12-160)||(45422385-45422534)
chr2 (48-132)||(9668161-9668245)
chr2 (48-132)||(11233644-11233728)
[»] chr5 (2 HSPs)
chr5 (12-152)||(10486036-10486177)
chr5 (48-150)||(588408-588511)
[»] scaffold0418 (1 HSPs)
scaffold0418 (12-132)||(8469-8589)
[»] chr8 (1 HSPs)
chr8 (12-119)||(7453217-7453324)
[»] scaffold0029 (1 HSPs)
scaffold0029 (12-152)||(133979-134120)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-152)||(311807-311948)
[»] scaffold0131 (1 HSPs)
scaffold0131 (12-152)||(3682-3823)
[»] chr6 (1 HSPs)
chr6 (45-127)||(13086441-13086523)
[»] chr1 (2 HSPs)
chr1 (48-132)||(20796561-20796645)
chr1 (48-132)||(39431187-39431271)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 46626687 - 46627091
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  46626687 acagattttaacagaaccaaacgtcctccaaaggaaagaaaccggctattccaacccgtaagtctagctttaattcgatgcacaataggatcccaaaaac 46626786  T
Q  112 taagacgacgcggattacccc-aacaggcaagcccaagtacataaaaggataaataacacttcaaatttacttgattgtaacgtgaagatgtatgaacca 210  Q
    || ||||| |||||||||||| || || ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||                   
T  46626787 tatgacgatgcggattacccccaatagacaaacccaagtacataaaaggataaataaccattcaaatttacttgattgtaacgtg--------------- 46626871  T
Q  211 ttggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatatacacatctcgtattttgattgtgtgaaattaattgcat 310  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  46626872 ---gttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatatacacatctcgtattttgattgtgtgaaattaattg--- 46626965  T
Q  311 tgcattgacttggaatcttggatattggtattttgttcaaaaatgttaattacttacaacatatattgtcatcaatattctttctatttggtctttgctt 410  Q
      ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46626966 --cattgacttggaatcttggatattggtattttgttcaaaaatgataattacttacaacatatattgtcatcaatattctttctatttggtctttgctt 46627063  T
Q  411 cattgttagtttgcaaaacacagcaagt 438  Q
    |||||||||||||||||||||| |||||    
T  46627064 cattgttagtttgcaaaacacaacaagt 46627091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 46640888 - 46640993
Alignment:
Q  192 cgtgaagatgtatgaaccattggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatatacacatctcgtattttgat 291  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  46640888 cgtgaagatgtatgtatcattagttttattatttatttatctttttacg-aaaatgtaccattagttgtgacttgtgatatacacatctggtattttgat 46640986  T
Q  292 tgtgtga 298  Q
    || ||||    
T  46640987 tgcgtga 46640993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 12378181 - 12378094
Alignment:
Q  74 tctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggatta-ccccaacaggcaagcccaagtacataaaagga 160  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||| || ||||| |||||| ||| ||||| ||||||| |||||||    
T  12378181 tctagcttcaattcgattcacaatagggtcccaaaaactaagacgatgcagattacccccaatagggaagcctaagtacaaaaaagga 12378094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 34232566 - 34232707
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||| ||||||||||||| ||| || | ||| || | ||| || ||||||||||| |  |  |||||||| || |||| ||||| ||| ||||||||||    
T  34232566 acagactttaacagaaccagacggccaccaaaagataaaaaacgactattccaaccagacaacctagcttttatacgattcacaaaaggttcccaaaaac 34232665  T
Q  112 taagacgacgcggattacccc-aacaggcaagcccaagtaca 152  Q
    | | ||| || ||||| |||| || |||||||||||||||||    
T  34232666 tcaaacgccgaggatttcccccaataggcaagcccaagtaca 34232707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 7662583 - 7662434
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  7662583 acagattttaacagaaccaaacgtcctccaaaggaaagaaaccggctattccaacccataagtctagctttaattcgattcacaataggatcccaaaaac 7662484  T
Q  112 taagacgacgcggatta-ccccaacaggcaagcccaagtacataaaagga 160  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  7662483 taagacgacgcggattacccccaataggcaagcccaagtacataaaagga 7662434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 23279697 - 23279809
Alignment:
Q  41 aaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacccc-aacaggc 139  Q
    |||||| ||||| ||| |||||||||  |||||||||| ||||||||||| || |||||| ||  |||||||||||||||| |||||||||| || ||||    
T  23279697 aaaggagagaaaccggttattccaactcgtaagtctagttttaattcgattcaaaatagggtcataaaaactaagacgacgtggattacccctaataggc 23279796  T
Q  140 aagcccaagtaca 152  Q
    |||||||||||||    
T  23279797 aagcccaagtaca 23279809  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 3129251 - 3129190
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaag 73  Q
    ||||||||||| || |||||||| |||| ||||||||||||||||| ||||||||| |||||    
T  3129251 acagattttaaaagtaccaaacgacctccaaaggaaagaaatcggcaattccaacccgtaag 3129190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 30166598 - 30166449
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  30166598 acagattttaacagaaccaaacgtcctccaaaggaaagaaaccggctattccaacccataagtctagctttaattcgattcacaataggatcccaaaaac 30166499  T
Q  112 taagacgacgcgga-ttaccccaacaggcaagcccaagtacataaaagga 160  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||    
T  30166498 taagacgacgcggatttcccccaataggcaagcccaagtacataaaagga 30166449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 372
Target Start/End: Complemental strand, 18380346 - 18380165
Alignment:
Q  179 tacttgattgtaacgtgaagatgtatgaaccattggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatat------ 272  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    |||| |||   |  |  |  ||||||||||||||||||          
T  18380346 tacttgactgtaacgtgaagatgtatgcaccattggttttattatttattta----tttatgtatcttttagaa--agttgtgaattgtgatatacacat 18380253  T
Q  273 -acacatctcgtattttgattgtgtgaaattaattgcattgcattgacttggaatcttggatattggtattttgttcaaaaatgttaattacttacaaca 371  Q
     |||||||| |||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||| |||||||||||||||    
T  18380252 aacacatctggtattttgattgtgtgaaattaattgcattg-------------acttggatattggtattttgttcaaaaatgataattacttacaaca 18380166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 46907945 - 46907845
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||| ||||| ||||||||||| || | ||||||| ||||||| ||||||||||| |  |||||||||||||| |||| || |||||||||||||||||    
T  46907945 acagactttaaaagaaccaaacggccgcaaaaggaatgaaatcgactattccaaccagacagtctagctttaatacgattcaaaataggatcccaaaaac 46907846  T
Q  112 t 112  Q
    |    
T  46907845 t 46907845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 21739727 - 21739643
Alignment:
Q  48 agaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacccc 132  Q
    ||||| ||||||||||||||||  ||||||| ||||||||  | ||||| ||| ||||||||    |||||||||||||||||||    
T  21739727 agaaaccggctattccaacctgacagtctagatttaattctgttcacaacagggtcccaaaacgacagacgacgcggattacccc 21739643  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 18379997 - 18379964
Alignment:
Q  377 tgtcatcaatattctttctatttggtctttgctt 410  Q
    |||| |||||||||||||||||||||||||||||    
T  18379997 tgtcgtcaatattctttctatttggtctttgctt 18379964  T

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Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 45422385 - 45422534
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||    
T  45422385 acagattttaatagaaccaaacgtcctccaaaggaaagaaaccggctattccaacccataagtctagctttaatacgattcacaataggatcccaaaaac 45422484  T
Q  112 taagacgacgcggatta-ccccaacaggcaagcccaagtacataaaagga 160  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  45422485 taagacgacgcggattacccccaataggctagcccaagtacataaaagga 45422534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 9668245 - 9668161
Alignment:
Q  48 agaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacccc 132  Q
    ||||| ||| ||||||||||||  | ||||| |||||||| || ||||| ||| ||||||||   ||||||||||||||||||||    
T  9668245 agaaaccggttattccaacctgacaatctagatttaattctattcacaacagggtcccaaaacgaaagacgacgcggattacccc 9668161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 11233728 - 11233644
Alignment:
Q  48 agaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacccc 132  Q
    ||||| ||| ||||||||||||  ||||||| |||||||| || ||||| ||| ||||||||   ||||||||||||||| ||||    
T  11233728 agaaaccggttattccaacctgacagtctagatttaattctattcacaacagggtcccaaaacgaaagacgacgcggattgcccc 11233644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 10486177 - 10486036
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  10486177 acagattttaaaagaaccaaacgtcctccaaaggaaagaaaccggctattccaacccgtaagtctagctttgattcgatgcacaatagggtcccaaaaac 10486078  T
Q  112 taagacgacgcggatta-ccccaacaggcaagcccaagtaca 152  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  10486077 taagacgacgcggattacccccaataggcaagcccaagtaca 10486036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 588408 - 588511
Alignment:
Q  48 agaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacc-ccaacaggcaagccca 146  Q
    |||||||||||||||||||  ||||||||||||| |||||||| ||||||||| |||||||| |||||||| ||| ||||||| |||| ||| ||||| |    
T  588408 agaaatcggctattccaactcgtaagtctagcttgaattcgattcacaatagggtcccaaaagctaagacgccgcagattaccgccaataggtaagccta 588507  T
Q  147 agta 150  Q
    ||||    
T  588508 agta 588511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 8469 - 8589
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  8469 acagattttaacagaaccaaacgtcctccaaaggaaagaaaccggctattccaacccataagtctagctttaattcgattcacaataggatcccaaaaac 8568  T
Q  112 taagacgacgcggattacccc 132  Q
    |||||||||||||||||||||    
T  8569 taagacgacgcggattacccc 8589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 7453217 - 7453324
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  7453217 acagattttaaaagaaccagacgtcctccaaaggaaagaaaccggctattccaacccgtaagtctagctttaactcgattcacaataggatcccaaaaac 7453316  T
Q  112 taagacga 119  Q
    ||||||||    
T  7453317 taagacga 7453324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 134120 - 133979
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||||||||| || ||||| ||||| | |||||||||||| |||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||||    
T  134120 acagattttaaaagtaccaaccgtccaccaaaggaaagaaaccggctattccaacccgtaagtctagattttattcgatgcacaatagggtcccaaaaac 134021  T
Q  112 taagacgacgcggatta-ccccaacaggcaagcccaagtaca 152  Q
    |||| ||||| |||||| |||||| ||| |||||||||||||    
T  134020 taagccgacgtggattacccccaataggtaagcccaagtaca 133979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 311948 - 311807
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||||||||| || ||||| ||||| | |||||||||||| |||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||||    
T  311948 acagattttaaaagtaccaaccgtccaccaaaggaaagaaaccggctattccaacccgtaagtctagattttattcgatgcacaatagggtcccaaaaac 311849  T
Q  112 taagacgacgcggatta-ccccaacaggcaagcccaagtaca 152  Q
    |||| ||||| |||||| |||||| ||| |||||||||||||    
T  311848 taagccgacgtggattacccccaataggtaagcccaagtaca 311807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 3823 - 3682
Alignment:
Q  12 acagattttaacagaaccaaacgtcctctaaaggaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaac 111  Q
    ||||||||||| || |||||| |||| | |||||||||||| | |||||||||||| |||||||||| ||| ||||||| ||||||| | ||||||||||    
T  3823 acagattttaaaagtaccaaatgtccgccaaaggaaagaaaccagctattccaacccgtaagtctagatttgattcgatgcacaatatggtcccaaaaac 3724  T
Q  112 taagacgacgcggatta-ccccaacaggcaagcccaagtaca 152  Q
    |||| |||||||| ||| ||||||  ||||||||||||||||    
T  3723 taagccgacgcgggttacccccaattggcaagcccaagtaca 3682  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 13086441 - 13086523
Alignment:
Q  45 gaaagaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggatt 127  Q
    |||||||| ||||||||||||| ||  ||||||| |||||||| || ||||| ||| ||||||||   |||||||||||||||    
T  13086441 gaaagaaaccggctattccaacttgacagtctagatttaattctattcacaacaggttcccaaaacgaaagacgacgcggatt 13086523  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 20796561 - 20796645
Alignment:
Q  48 agaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacccc 132  Q
    |||||||| |||||||||||||  | ||||| |||||||| || ||||| ||| ||||||||   |||||||| |||||||||||    
T  20796561 agaaatcgactattccaacctgacaatctagatttaattctattcacaacagggtcccaaaatgaaagacgacacggattacccc 20796645  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 39431187 - 39431271
Alignment:
Q  48 agaaatcggctattccaacctgtaagtctagctttaattcgatacacaataggatcccaaaaactaagacgacgcggattacccc 132  Q
    ||||| || |||||||||||||  | ||||| |||||||| || ||||| ||| ||||||||   |||||||| |||||||||||    
T  39431187 agaaaccgactattccaacctgacaatctagatttaattctattcacaacagggtcccaaaatgaaagacgactcggattacccc 39431271  T

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