View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17293_low_9 (Length: 410)
Name: NF17293_low_9
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 43850755 - 43850369
Alignment:
| Q |
1 |
tagagtcacgtgctggaattaaccgatgtttccaatcaacctaatgatgtccaaagtttagataattagctttacttttgatttcttagagttgggaatc |
100 |
Q |
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| T |
43850755 |
tagagtcacctgctggaattaaccgatgtttccaatcaacctaatgatgtccaaagtttagataattagctttacttttgatttcttagagttgggaatc |
43850656 |
T |
|
| Q |
101 |
caacaaccatgattctaaataaaagtctctaagtggaactgaatgtttgttaagtccaacatcaattcttgacaccaaagctttaacctcattg---aat |
197 |
Q |
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| T |
43850655 |
caacaaccatgattctaaataaaagtctctaagtggaactgaaggtttgataagtccaacatcaattcttgacaccaaagctttaacctcattggagaat |
43850556 |
T |
|
| Q |
198 |
ccattctcaattaccaataggaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtcttgtcagtgttctaaaagatgaaa |
297 |
Q |
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| T |
43850555 |
ccattctcaattaccaataggaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtcttgtcggtgttctaaaagatgaaa |
43850456 |
T |
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| Q |
298 |
cttttcatcaaaattttgaaaataaactaagcaagagtgaaaatccctcccctgccaacttccaggttttcatcaaaaactgatcaa |
384 |
Q |
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| T |
43850455 |
cttttcatcaaaattttgaaaataaactaagcaagagtgaaaatccctcccctgccaacctccaggttttcatcaaaaactgatcaa |
43850369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 331
Target Start/End: Original strand, 31875780 - 31875993
Alignment:
| Q |
121 |
aaaagtctctaagtggaactgaatgtttgttaagtccaacatcaattcttgacaccaaagctttaacctcattg---aatccattctcaattaccaatag |
217 |
Q |
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|||| ||||| | |||||||||| |||| ||||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
31875780 |
aaaaatctctcactggaactgaagctttgataagtccaacatcaactcttgacacaaaagcattaacctcatttgaaaatcctttctcaattaccaatag |
31875879 |
T |
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| Q |
218 |
gaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtcttgtcagtgttctaaaagatgaaacttttcatcaaaattttgaa |
317 |
Q |
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||||||| |||| || | ||||||||||||| || | ||||||| || || |||||| | ||||||||||||||||| ||| ||||||||||| ||| |
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| T |
31875880 |
caacaaagtttgtagcactagggacaaagtagcttcaaaaaccattggtcttggtcttattggtgttctaaaagatgaaccttctcatcaaaattctgat |
31875979 |
T |
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| Q |
318 |
aataaactaagcaa |
331 |
Q |
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||||||||||||| |
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| T |
31875980 |
cataaactaagcaa |
31875993 |
T |
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