View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17294_low_1 (Length: 584)
Name: NF17294_low_1
Description: NF17294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17294_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 23 - 571
Target Start/End: Complemental strand, 12683814 - 12683266
Alignment:
| Q |
23 |
tgccggtgtagttgccgccgcttactgccactttttacaacagtccatgcactcttttagcccctacctagagcctcattcaatgattaattacaatcat |
122 |
Q |
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| T |
12683814 |
tgccggtgtagttgccgccgcttactgccactttttacaacagtccatgcactcttttagcccctacctagagcctcattcaatgattaattacaatcat |
12683715 |
T |
|
| Q |
123 |
tattttcattgaggtggcggtggtttgttggcaaccacttcataattgtcaataccttcgtcttcgtcctcgtcatcatcaccgtcatcatcgtcataat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683714 |
tattttcattgaggtggcggtggtttgttggcaaccacttcataattgtcaataccttcgtcttcgtcctcgtcatcatcaccgtcatcatcgtcataat |
12683615 |
T |
|
| Q |
223 |
attcttcttcatctcgacgcggctgatcattctcagtctcagcttcctccatggtcacatccgccccggctgctggtggcacctgttgctgtggaggcca |
322 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683614 |
attcttcttcatctcgatgcggccgatcattctcagtctcagcttcctccatggtcacatccgccccggctgctggtggcacctgttgctgtggaggcca |
12683515 |
T |
|
| Q |
323 |
ctgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccaccttgttcttctgcctgtataga |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683514 |
ctgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccaccttgttcttctgcctgtataga |
12683415 |
T |
|
| Q |
423 |
gcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttctcccatt |
522 |
Q |
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| T |
12683414 |
gcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttttcccatt |
12683315 |
T |
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| Q |
523 |
tctctttgcacctctttgcattcctattgtaccccattttcttcatcaa |
571 |
Q |
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| T |
12683314 |
tctctttgcacctctttgcattcctattgtaccccattttcttcatcaa |
12683266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 435 - 553
Target Start/End: Original strand, 44553311 - 44553429
Alignment:
| Q |
435 |
tgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacc |
534 |
Q |
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||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| || ||||||||||| |||||||||| |
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| T |
44553311 |
tgaaaataaggacatgtctttgaatcttcgggtctctttttgttactctctttcactttcttgaagtacttgtttatattctcccatttttctttgcacc |
44553410 |
T |
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| Q |
535 |
tctttgcattcctattgta |
553 |
Q |
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| T |
44553411 |
tttttgcattcctattgta |
44553429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 473 - 553
Target Start/End: Complemental strand, 44533734 - 44533654
Alignment:
| Q |
473 |
cttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacctctttgcattcctattgta |
553 |
Q |
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|||||| |||||||||| ||||||| | || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
44533734 |
cttgttactttccttcattttcttgtagtatttgttgatattctcccatttttctttgcacctttttgcattcctattgta |
44533654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 36127420 - 36127466
Alignment:
| Q |
496 |
tgaaatacttgttaatgttctcccatttctctttgcacctctttgca |
542 |
Q |
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||||||||||||| || |||||||| ||||||||||| ||||||||| |
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| T |
36127420 |
tgaaatacttgttgatattctcccacttctctttgcatctctttgca |
36127466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 44553171 - 44553205
Alignment:
| Q |
319 |
gccactgctgctccggctgaaccatcaacggtgcc |
353 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44553171 |
gccattgctgctccggctgaaccatcaacggtgcc |
44553205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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