View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17295_high_1 (Length: 509)
Name: NF17295_high_1
Description: NF17295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17295_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 26723025 - 26723401
Alignment:
| Q |
1 |
agtggatggttgaggcacgattctatagaaagttctcctgtcaagatcggtgatcctgttgtttggaaaaatgagactttgttttactgtgaggtgttac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
26723025 |
agtggatggttgaggcacgattctatagaaagttctcctgtcaagatcggtgatcctgttgttgggaaaaatgagactttgttttactgtgaggcgttac |
26723124 |
T |
|
| Q |
101 |
tagaattaaagaaatatatctttgagtcgactatgttgtgaattttggtttagctatttctatttcaagtattgggactatctattttgttactatactt |
200 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
26723125 |
tagaattaaagaagtatatttttgagtcgactatgttgtgaattttggtttagctatttctatttcgagtattgggactatct-ttttgttactagactt |
26723223 |
T |
|
| Q |
201 |
caggaaaagtatagttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcagactatctattttactaaagcattctgccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26723224 |
taggaaaagtatagttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcagactatctattttattaaagcattctgccaa |
26723323 |
T |
|
| Q |
301 |
tttttatcgtgatcaatatgtttgaactcaatgaagaattttgatttctttttattttattcattattcaagtgtctt |
378 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26723324 |
tttttgtcgtgatcaatatgtttgaactcaatgaagaattttaatttctttttattttattcattattcaagtgtctt |
26723401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 390 - 493
Target Start/End: Original strand, 26723447 - 26723550
Alignment:
| Q |
390 |
agttatattaacattcatatatttgataacctatcaatttgtttgagaacaattattatgcatgttaacactgtttgaaaaagaaaactaatatgtatgc |
489 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26723447 |
agttatattaacattcatatatttgataacctatcaatttgtttgagaacaactattatgcatgttaacactgtttgaaaaagaaaactaatatgtatgc |
26723546 |
T |
|
| Q |
490 |
taag |
493 |
Q |
| |
|
|||| |
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|
| T |
26723547 |
taag |
26723550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 115 - 378
Target Start/End: Original strand, 2987880 - 2988145
Alignment:
| Q |
115 |
tatatctttgagtcgactatgttgtgaattttggtttagctatttctatttcaagtattgggactatctattttgttactatacttcaggaaaagtatag |
214 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
2987880 |
tatatttttgagtcgactatgttgtgaattttggtttagttatttctatttagagtatcgagactatctattttgttactagacttcaggaaaagtatag |
2987979 |
T |
|
| Q |
215 |
ttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcag--actatctattttactaaagcattctgccaatttttatcgtga |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
2987980 |
ttttgagtcgattatgttgtcaattttggtttagaagtttctatttcgagtatcagaaactatctattttattaaagcattctgccaatgtttgtcgtga |
2988079 |
T |
|
| Q |
313 |
tcaatatgtttgaactcaatgaagaattttgatttctttttattttattcattattcaagtgtctt |
378 |
Q |
| |
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|
| T |
2988080 |
tcaatatgtttgaactcaatgaagaattttgatttctttttattttattcattattcaagtgtctt |
2988145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 378 - 493
Target Start/End: Original strand, 2988177 - 2988292
Alignment:
| Q |
378 |
tattgaaatcaaagttatattaacattcatatatttgataacctatcaatttgtttgagaacaattattatgcatgttaacactgtttgaaaaagaaaac |
477 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
2988177 |
tattgaaatcagagttatattaacattcatatattcgataacctatcaatttgtttgagaacaactaatatgcatgttaacactgtttgaaaaagaaaac |
2988276 |
T |
|
| Q |
478 |
taatatgtatgctaag |
493 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
2988277 |
taatatgtatgctaag |
2988292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 115 - 378
Target Start/End: Complemental strand, 45116498 - 45116233
Alignment:
| Q |
115 |
tatatctttgagtcgactatgttgtgaattttggtttagctatttctatttcaagtattgggactatctattttgttactatacttcaggaaaagtatag |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
45116498 |
tatatttttgagtcgactatgttgtgaattttggtttaggtatttctatttagagtatcgagactatctattttgttactagacttcaggaaaagtatag |
45116399 |
T |
|
| Q |
215 |
ttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcag--actatctattttactaaagcattctgccaatttttatcgtga |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||| |||||| |
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|
| T |
45116398 |
ttttgagtcgattatgttgtcaattttggtttagaagtttctatttcgagtatcagaaactatctattttattaaagcattctgccaatgtttgtcgtga |
45116299 |
T |
|
| Q |
313 |
tcaatatgtttgaactcaatgaagaattttgatttctttttattttattcattattcaagtgtctt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45116298 |
tcaatatgtttgaactcaatgaagaattttgatttctttttattttattcattattcaagtgtctt |
45116233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 378 - 493
Target Start/End: Complemental strand, 45116201 - 45116086
Alignment:
| Q |
378 |
tattgaaatcaaagttatattaacattcatatatttgataacctatcaatttgtttgagaacaattattatgcatgttaacactgtttgaaaaagaaaac |
477 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
45116201 |
tattgaaatcagagttatattaacattcatatattcgataacctatcaatttgtttgagaacaactaatatgcatgttaacactgtttgaaaaagaaaac |
45116102 |
T |
|
| Q |
478 |
taatatgtatgctaag |
493 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45116101 |
taatatgtatgctaag |
45116086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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