View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17295_low_3 (Length: 303)
Name: NF17295_low_3
Description: NF17295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17295_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 41613583 - 41613342
Alignment:
| Q |
14 |
tgagaaaatagattattaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgctgctgatgttagattg |
113 |
Q |
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| T |
41613583 |
tgagaaaatagattattaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgctgctgatgttagattg |
41613484 |
T |
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| Q |
114 |
attcctttcaggaataaagattggaacagagttacactgcataagttcattcataccaatgatcaaaatatagaaatccgaaagctagtatttaaccgtc |
213 |
Q |
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| T |
41613483 |
attcctttcaggaataaagattggaacagagttacactgcataagttcattcataccaatgatcaaaatatagaaatccgaaagctagtatttaaccgtc |
41613384 |
T |
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| Q |
214 |
attctttcgacgaatttcagtattagtaagcaaacatgtaga |
255 |
Q |
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| T |
41613383 |
attctttcgacgaatttcagtattagtaagcaaacatgtaga |
41613342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 3857996 - 3858101
Alignment:
| Q |
28 |
attaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgctgctgatgttagattgattcctttcaggaa |
127 |
Q |
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| T |
3857996 |
attacccaaaagtccatgcgatgatgaagataaaacctggggcaaggtttggcatagcagttcccattgctggtgaagttagattgattcccttcaggaa |
3858095 |
T |
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| Q |
128 |
taaaga |
133 |
Q |
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|||||| |
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| T |
3858096 |
taaaga |
3858101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 42905229 - 42905271
Alignment:
| Q |
255 |
ataatactgagatgaggaaaagaaggaagaatattgtggggtt |
297 |
Q |
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| T |
42905229 |
ataatagtgagatgaggaaaagaaggaagaatattgtggggtt |
42905271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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