View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17295_low_5 (Length: 279)
Name: NF17295_low_5
Description: NF17295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17295_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 31068792 - 31069055
Alignment:
| Q |
19 |
gtaacaggtgctactttttatttatgatgaaaatgaagctttaaaacgaaatataaaccatt---gtaatgt---attaa----gtatatttttacaatt |
108 |
Q |
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| T |
31068792 |
gtaacaggtgctacttctt-tttatgatgaaaatgaagctttaaaacgaaatattaaccattattgtaatgttgtattaaaatagtatatttttacaatt |
31068890 |
T |
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| Q |
109 |
gttgcaaacttcataagaaaataataatgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagag |
208 |
Q |
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| T |
31068891 |
gttgcaaacttcataagaaaaaaa-agtgatgaactaaagtagatatcttacttaggacaaagagagaagctatccatacaccagttttagcacgaaggg |
31068989 |
T |
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| Q |
209 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcatgctccctttcttctctct |
274 |
Q |
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| T |
31068990 |
gaactttgcctttacaatccacagaaccatcataaacccatttctcatgctccctttcttctctct |
31069055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 31085583 - 31085744
Alignment:
| Q |
109 |
gttgcaaacttcataagaaaataataatgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagag |
208 |
Q |
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| T |
31085583 |
gttgcaaactttataagaaaaaaa--atgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagcacgaagag |
31085680 |
T |
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| Q |
209 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcatgctccctttcttctct |
272 |
Q |
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| T |
31085681 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcttgttcactttcttctct |
31085744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 31059520 - 31059618
Alignment:
| Q |
153 |
tatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagaggaacttttcctttacaatccacagaaccatcataaacccattt |
251 |
Q |
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| T |
31059520 |
tatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatcaaaagaaccatcatacacccattt |
31059618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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