View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17296_low_1 (Length: 569)
Name: NF17296_low_1
Description: NF17296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17296_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 28435672 - 28436228
Alignment:
| Q |
1 |
cctgcaacgcgcgctgaatttcgtttaggagacaatggacttgatttttataccgttaatgtcgtagaaggtttcaacatccccatagcagtgactccta |
100 |
Q |
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| T |
28435672 |
cctgcaacgcgcgctgaatttcgtttaggagacgatggacttgatttttataccgttaatgtcgtagaaggtttcaacatccccatagcagtgactccta |
28435771 |
T |
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| Q |
101 |
tgggtgcttctggtgagaatctcaattgcagcagcgcgggttgccctgcaaatataaatactatgtgtccgacagagcttaaggtgatggaaaatgagga |
200 |
Q |
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| T |
28435772 |
tgagtgcttctggtgagaatctcaattgcagcagcgcgggttgccctgcaaatataaatactatgtgtccgacagagcttaaggtgatggaaaatgagga |
28435871 |
T |
|
| Q |
201 |
tgtggtcgcttgtcaaggagcttgctctacagataatttggaaaatttttgttgtcttaagagtaacttttcaactagtgaaacttgtgatccaagttct |
300 |
Q |
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| T |
28435872 |
tgtagtcgcttgtcaaggagcttgctctacagataatttggaaaatttttgttgtcttaagagtaacttttcaacaagtgaaacttgtgatccaagttct |
28435971 |
T |
|
| Q |
301 |
tatgctctcacattcaagacagcatgtcctcatgcctatagctaccctcacaacaaggaaaacacattcagttgttcatctaaactttacaaaatcatct |
400 |
Q |
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| T |
28435972 |
tatgctctcacattcaagacagcatgtcctcatgcctatagctaccctcacaacaaggaaaacacattcagttgttcatctaaactttacaaaatcatct |
28436071 |
T |
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| Q |
401 |
tttgcccagcttccagcgatgatgacaggttcgaccttgcaa-tttttctccaattaacaatatttagtttgaaccaaggcactcgcatataacgttctc |
499 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28436072 |
tttgcccagcttccagcgatgatgacaggttagaccttgcaattttttctccaattaacaatatttagtttgaaccaaggcactcgcatataacgttctc |
28436171 |
T |
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| Q |
500 |
tcaacttacaactaaagtaggtagaatcaaagtcaatattttaataatgtgacattt |
556 |
Q |
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| T |
28436172 |
tcaacttacaactaaagtaggtagaatcaaagtcaatattttaataatgtgacattt |
28436228 |
T |
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