View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17296_low_2 (Length: 480)
Name: NF17296_low_2
Description: NF17296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17296_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Complemental strand, 15509518 - 15509086
Alignment:
| Q |
20 |
aggtgtaagctcggtggtaagagcttggtcaaataatctcaaaagacggagttcaaaacctctcgggaaagaacttaaa-tagtcattacaaaccagact |
118 |
Q |
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| T |
15509518 |
aggtgtaagcccgatggtaagaggttggtcaaataatctcaagagacggagttcaaaacttctccggaaagaacctaaaatagtcattacaaacgagact |
15509419 |
T |
|
| Q |
119 |
tggtttgcacctaggaaattagccaataacaaccagtaaaaccaaacataagaatataacaagatgaaattcggaaccatttataatcctaattacaact |
218 |
Q |
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| T |
15509418 |
tggtttgcacctaggaaattagccaataacaactagtaaaaccaaacataagaatataacaagatgaaattcggaaccatttagaatcctaattacaact |
15509319 |
T |
|
| Q |
219 |
ctgatgttcaatacaaccaacatggtatcgagaaggtcagtataaaacaactctctcatnnnnnnngaaaccgagtttgattcctaaagttgcccatttg |
318 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
15509318 |
ctgatgttcaatataaccaacatggtatcgagaaggtcagtataaaacaactctctcataaaaaaagaaaccgagtttgattcctaaacttgcccatttg |
15509219 |
T |
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| Q |
319 |
ggagctaacctaactcgtgtggagcataataaaacaaaaagtcctgccgacaggtcaatgattagtctcatagcatatctaaagagcctaagtcgtggat |
418 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509218 |
ggagctaacctaactcgtgtggaggataataaaa-aaaaagtcctgccgacaggtcaatgattagtctcatagcatatctaaagagcctaagtcgtggat |
15509120 |
T |
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| Q |
419 |
atcatcaataacatcgtacaaagccttaactacg |
452 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15509119 |
atcatcaataacatcgtacaaagccttaactacg |
15509086 |
T |
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