View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17296_low_3 (Length: 415)

Name: NF17296_low_3
Description: NF17296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17296_low_3
NF17296_low_3
[»] chr4 (13 HSPs)
chr4 (143-224)||(50627752-50627837)
chr4 (143-228)||(27186408-27186496)
chr4 (20-100)||(43683612-43683692)
chr4 (143-228)||(43683479-43683569)
chr4 (20-100)||(27186285-27186365)
chr4 (24-100)||(50627880-50627956)
chr4 (20-91)||(10317010-10317081)
chr4 (20-76)||(8892582-8892638)
chr4 (22-76)||(31670232-31670286)
chr4 (20-91)||(35842886-35842957)
chr4 (144-208)||(41885185-41885253)
chr4 (20-76)||(53722146-53722202)
chr4 (145-211)||(35843007-35843077)
[»] chr2 (6 HSPs)
chr2 (143-228)||(13270828-13270917)
chr2 (143-226)||(35950248-35950335)
chr2 (20-76)||(12999426-12999482)
chr2 (20-75)||(8055531-8055586)
chr2 (20-76)||(6463400-6463456)
chr2 (20-75)||(8050978-8051033)
[»] chr3 (12 HSPs)
chr3 (143-228)||(9697850-9697938)
chr3 (143-228)||(43547986-43548074)
chr3 (20-100)||(9697727-9697807)
chr3 (20-97)||(43547864-43547941)
chr3 (20-91)||(11004350-11004421)
chr3 (20-76)||(9105414-9105470)
chr3 (143-206)||(43554831-43554897)
chr3 (25-100)||(43554713-43554788)
chr3 (20-77)||(21847250-21847307)
chr3 (20-77)||(21850340-21850397)
chr3 (145-211)||(39398938-39399008)
chr3 (160-223)||(38175586-38175654)
[»] chr1 (7 HSPs)
chr1 (143-226)||(10504696-10504783)
chr1 (20-91)||(43591768-43591839)
chr1 (143-215)||(3742743-3742818)
chr1 (20-76)||(26311649-26311705)
chr1 (20-76)||(26316140-26316196)
chr1 (28-77)||(16588439-16588488)
chr1 (20-75)||(39793970-39794025)
[»] chr5 (9 HSPs)
chr5 (20-90)||(26336753-26336823)
chr5 (143-226)||(10277463-10277550)
chr5 (143-228)||(10274805-10274894)
chr5 (20-91)||(36632441-36632512)
chr5 (20-91)||(19502448-19502519)
chr5 (20-60)||(20830306-20830346)
chr5 (20-76)||(30695432-30695488)
chr5 (20-91)||(32485932-32486003)
chr5 (20-55)||(43385091-43385126)
[»] chr7 (9 HSPs)
chr7 (143-223)||(733480-733563)
chr7 (20-91)||(7466470-7466541)
chr7 (20-91)||(22901295-22901368)
chr7 (20-91)||(27756985-27757059)
chr7 (20-91)||(27761536-27761610)
chr7 (20-76)||(47419540-47419596)
chr7 (20-93)||(733612-733684)
chr7 (20-91)||(35705774-35705845)
chr7 (227-281)||(22069934-22069988)
[»] chr8 (9 HSPs)
chr8 (20-91)||(33072057-33072128)
chr8 (143-229)||(42234498-42234589)
chr8 (20-77)||(28644701-28644758)
chr8 (145-211)||(33072178-33072248)
chr8 (20-76)||(42234656-42234712)
chr8 (24-91)||(30405764-30405834)
chr8 (24-91)||(30410273-30410343)
chr8 (160-228)||(1286905-1286977)
chr8 (20-76)||(38757130-38757186)
[»] chr6 (9 HSPs)
chr6 (20-76)||(17096236-17096292)
chr6 (20-91)||(14531734-14531805)
chr6 (20-91)||(17895670-17895741)
chr6 (20-90)||(17886796-17886866)
chr6 (20-77)||(27552071-27552128)
chr6 (20-75)||(8315466-8315521)
chr6 (20-91)||(8319987-8320060)
chr6 (20-77)||(27574699-27574756)
chr6 (20-76)||(17780054-17780110)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 50627837 - 50627752
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc----tttcattgcttgttgaacaagctttagtgttgcgctaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  50627837 ataattcataaatctacaaaccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagctttagtgttgcgctaa 50627752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 27186408 - 27186496
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc---tttcattgcttgttgaacaagctttagtgttgcgctaacaaa 228  Q
    |||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||    
T  27186408 ataattcataaatctacagaccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagctttagtgttgcgctatcaaa 27186496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 43683692 - 43683612
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataataacaacta 100  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||    
T  43683692 tgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatattttcataagaattaataataacaacta 43683612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 43683569 - 43683479
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc---tttcattgcttgttgaacaagctt--tagtgttgcgctaacaaa 228  Q
    |||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||  | ||||||||||||||||    
T  43683569 ataattcataaatctacaaaccctagaaactaaaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgttgcgctaacaaa 43683479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 27186285 - 27186365
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataataacaacta 100  Q
    ||||||||||| |||||| |||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||    
T  27186285 tgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattttcatgagaatcaataataacaacta 27186365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 50627956 - 50627880
Alignment:
Q  24 cttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataataacaacta 100  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||    
T  50627956 cttcaagcaacttagctagacattgtatataagctacctcctttatatattttcatcagaatcaataataacaacta 50627880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 10317081 - 10317010
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||    
T  10317081 tgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttcataagaattaataa 10317010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 8892638 - 8892582
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8892638 tgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 31670232 - 31670286
Alignment:
Q  22 tgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31670232 tgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 31670286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 35842886 - 35842957
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    ||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||| || || ||||||||    
T  35842886 tgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatattttcataagcatcaataa 35842957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 41885185 - 41885253
Alignment:
Q  144 taattcataaatctacaaaccctagaaactacaaaattgcttc----tttcattgcttgttgaacaagc 208  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||    ||||||||||||||||||||||    
T  41885185 taattcacaaatctataaaccctagaaactacaaaatttcttctggttttcattgcttgttgaacaagc 41885253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 53722146 - 53722202
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||||| ||| | |||||||||||||||| ||||||||| |||||    
T  53722146 tgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 35843007 - 35843077
Alignment:
Q  145 aattcataaatctacaaa-ccctagaaactacaaaattgcttct---ttcattgcttgttgaacaagcttt 211  Q
    ||||||||||||| |||| ||||| ||||||||||  |||||||   ||||||| ||||||||||||||||    
T  35843007 aattcataaatctgcaaaaccctaaaaactacaaatctgcttctgagttcattgtttgttgaacaagcttt 35843077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 13270917 - 13270828
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc----tttcattgcttgttgaacaagctttagtgttgcgctaacaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||    
T  13270917 ataattcataaatctacaaaccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagctttagtgctgcgctaacaaa 13270828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 35950335 - 35950248
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttct----ttcattgcttgttgaacaagctttagtgttgcgctaaca 226  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  35950335 ataattcatatacctacaaaccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagctttagtgttgcgctaaca 35950248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 12999482 - 12999426
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  12999482 tgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 8055531 - 8055586
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattt 75  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||    
T  8055531 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 8055586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 6463456 - 6463400
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    ||||||||||||||| || ||||| |||||||||||||||| ||||||||| |||||    
T  6463456 tgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacatttt 6463400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 8050978 - 8051033
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattt 75  Q
    ||||||||||||||| || ||||| |||||||||||||| | ||||||||| ||||    
T  8050978 tgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacattt 8051033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 9697850 - 9697938
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc---tttcattgcttgttgaacaagctttagtgttgcgctaacaaa 228  Q
    |||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||    
T  9697850 ataattcataaatctacagaccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagctttagtgttgcgctatcaaa 9697938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 43547986 - 43548074
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc---tttcattgcttgttgaacaagctttagtgttgcgctaacaaa 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||    
T  43547986 ataattcataaatctacaaaccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagctttagtgttgcgctatcaaa 43548074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 9697727 - 9697807
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataataacaacta 100  Q
    ||||||||||| |||||| |||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||    
T  9697727 tgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattttcatgagaatcaataataacaacta 9697807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 43547864 - 43547941
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataataacaa 97  Q
    |||||||||||||||||| | |||||||||||||||||||  ||||||||||||||| || |||||||||||||||||    
T  43547864 tgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatattttcatcagaatcaataataacaa 43547941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 11004421 - 11004350
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| || || ||||||||    
T  11004421 tgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatattttcataagtatcaataa 11004350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 9105414 - 9105470
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  9105414 tgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 43554831 - 43554897
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgctt---ctttcattgcttgttgaacaa 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||    ||||||||||||||||||||    
T  43554831 ataattcataaatctacaaaccctagaaactataaaattgcttatggtttcattgcttgttgaacaa 43554897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 43554713 - 43554788
Alignment:
Q  25 ttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataataacaacta 100  Q
    |||||||||||||   ||||||||||||| |||||| || ||||||||||||||| | ||||||||||||||||||    
T  43554713 ttcaagcaacttagtaagacattgtatatgagctacctcttttgtatatttttatcataatcaataataacaacta 43554788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 21847250 - 21847307
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattttt 77  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||    
T  21847250 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 21850340 - 21850397
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattttt 77  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||    
T  21850340 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 39399008 - 39398938
Alignment:
Q  145 aattcataaatctacaaa-ccctagaaactacaaaattgcttct---ttcattgcttgttgaacaagcttt 211  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||   ||||||||||||||||||||||||    
T  39399008 aattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagcttt 39398938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 38175654 - 38175586
Alignment:
Q  160 aaaccctagaaactacaaaattgcttct---ttcattgcttgttgaacaagctt--tagtgttgcgcta 223  Q
    |||||||||||||||||||| || ||||   |||||||||||||||||||| ||  |||||||||||||    
T  38175654 aaaccctagaaactacaaaactgtttctgatttcattgcttgttgaacaagatttgtagtgttgcgcta 38175586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 10504696 - 10504783
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc----tttcattgcttgttgaacaagctttagtgttgcgctaaca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||    
T  10504696 ataattcataaatctacaaaccctagaaactacaaaattgcttctgtttttcattgcttgttgaacaagcttttgtgttgcgctaaca 10504783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 43591839 - 43591768
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| || || ||||||||    
T  43591839 tgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatattttcataagcatcaataa 43591768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 3742743 - 3742818
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgctt---ctttcattgcttgttgaacaagctttagtg 215  Q
    |||||||||||||||||||||||   |||||||||||||||||    |||||||||||||||||||||||||||||    
T  3742743 ataattcataaatctacaaacccataaaactacaaaattgcttttgatttcattgcttgttgaacaagctttagtg 3742818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 26311649 - 26311705
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  26311649 tgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatatttt 26311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 26316140 - 26316196
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  26316140 tgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatatttt 26316196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 16588488 - 16588439
Alignment:
Q  28 aagcaacttaactagacattgtatataagctacttcctttgtatattttt 77  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16588488 aagcaacttagctagacattgtatataagctacctcctttgtatattttt 16588439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 39793970 - 39794025
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattt 75  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||    
T  39793970 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 39794025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 26336823 - 26336753
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaata 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  26336823 tgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttcattagaatcaata 26336753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 10277463 - 10277550
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc----tttcattgcttgttgaacaagctttagtgttgcgctaaca 226  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    ||||||||||||||||||||||||||||| ||||||||||    
T  10277463 ataattcataaatctacaaaccttagaaactaaaaaattgcttctggttttcattgcttgttgaacaagctttagtgctgcgctaaca 10277550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 10274805 - 10274894
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttct----ttcattgcttgttgaacaagctttagtgttgcgctaacaaa 228  Q
    |||||| |||||||||||||||||||||||||  |||||||||||    |||||||||||||||||||||||||||| ||||||||||||    
T  10274805 ataatttataaatctacaaaccctagaaactatgaaattgcttctcgttttcattgcttgttgaacaagctttagtgctgcgctaacaaa 10274894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 36632441 - 36632512
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || || ||||||||    
T  36632441 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcataagcatcaataa 36632512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 19502448 - 19502519
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||| || |||||||||||    
T  19502448 tgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatattttcataagaatcaataa 19502519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 20830346 - 20830306
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctac 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20830346 tgtgcttcaagcaacttaactagacattgtatataagctac 20830306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 30695432 - 30695488
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||    
T  30695432 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 30695488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 32486003 - 32485932
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||| |  |||| |||||||||||||||||||||| |||||| |||||||| |||| |||||||||    
T  32486003 tgtgcttcaacctccttagctagacattgtatataagctacctcctttatatattttcattaaaatcaataa 32485932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 43385091 - 43385126
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataa 55  Q
    |||||||||||||||||| |||||||||||||||||    
T  43385091 tgtgcttcaagcaacttagctagacattgtatataa 43385126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 733563 - 733480
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc---tttcattgcttgttgaacaagctttagtgttgcgcta 223  Q
    |||||||||||||||||||||||||||||| | |||||||||||   ||||||||||||||||||||||||||||| |||||||    
T  733563 ataattcataaatctacaaaccctagaaacaaaaaaattgcttctggtttcattgcttgttgaacaagctttagtgctgcgcta 733480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 7466541 - 7466470
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || || ||||||||    
T  7466541 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcataagtatcaataa 7466470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 22901295 - 22901368
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt-tat-tagaatcaataa 91  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  22901295 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataa 22901368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 27756985 - 27757059
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttat---tagaatcaataa 91  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||   ||||||||||||    
T  27756985 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataa 27757059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 27761536 - 27761610
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttat---tagaatcaataa 91  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||   ||||||||||||    
T  27761536 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataa 27761610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 47419596 - 47419540
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  47419596 tgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 47419540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 733684 - 733612
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataata 93  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||| || || ||||||||||    
T  733684 tgtgcttcgagcaacttagctagacattgtatataagctacctcctttgtatactttcataag-atcaataata 733612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 35705774 - 35705845
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagcta-cttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||  | ||||||||||||||||||||| ||| ||||||||||||| || || ||||||||    
T  35705774 tgtgcttcaagcaacc-agctagacattgtatataagctacctttctttgtatattttcataagtatcaataa 35705845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 22069988 - 22069934
Alignment:
Q  227 aaatcaagtgaaataatcacaaattattcaataataatatctttgtaattgtaat 281  Q
    |||||||||||||||||||||||||  |||||| ||||||| ||| |||| ||||    
T  22069988 aaatcaagtgaaataatcacaaattcctcaatagtaatatccttgaaattataat 22069934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 33072057 - 33072128
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  33072057 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcattagcatcaataa 33072128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 42234589 - 42234498
Alignment:
Q  143 ataattcataaatctacaaaccctagaaactacaaaattgcttc---tttcattgcttgttgaacaagctt--tagtgttgcgctaacaaaa 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||  | ||| |||||||||||||    
T  42234589 ataattcataaatctacaaaccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgctgcgctaacaaaa 42234498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 28644701 - 28644758
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattttt 77  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  28644701 tgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatattttt 28644758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 33072178 - 33072248
Alignment:
Q  145 aattcataaatctacaaa-ccctagaaactacaaaattgcttct---ttcattgcttgttgaacaagcttt 211  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||   ||||||||||||||||||||||||    
T  33072178 aattcataaatctgcaaaaccctagaaactacaaatttgcttctgagttcattgcttgttgaacaagcttt 33072248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 42234712 - 42234656
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||    
T  42234712 tgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 30405834 - 30405764
Alignment:
Q  24 cttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttat---tagaatcaataa 91  Q
    ||||||||||| || ||||| |||||||||||||||| ||||||||| ||||||||   ||||||||||||    
T  30405834 cttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataa 30405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 30410343 - 30410273
Alignment:
Q  24 cttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttat---tagaatcaataa 91  Q
    ||||||||||| || ||||| |||||||||||||||| ||||||||| ||||||||   ||||||||||||    
T  30410343 cttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataa 30410273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 1286905 - 1286977
Alignment:
Q  160 aaaccctagaaactacaaaattgcttct---ttcattgcttgttgaacaagctt--tagtgttgcgctaacaaa 228  Q
    ||||||||||||||||||| | ||||||   |||||||||||||||||||||||  | ||||||||||||||||    
T  1286905 aaaccctagaaactacaaact-gcttctgatttcattgcttgttgaacaagctttgttgtgttgcgctaacaaa 1286977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 38757130 - 38757186
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||| |||||||||| || | ||| |||||||||||||||| |||||||||||||||    
T  38757130 tgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 17096292 - 17096236
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  17096292 tgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 14531805 - 14531734
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    ||||||| |||||||||| ||||||||||||||||  ||||  |||||||||||||| ||||||||||||||    
T  14531805 tgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatattttcattagaatcaataa 14531734  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 17895741 - 17895670
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaataa 91  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||| || ||||| |||||    
T  17895741 tgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtattttttcataagaataaataa 17895670  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 17886866 - 17886796
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttttattagaatcaata 90  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||||| |||| || ||||| ||||    
T  17886866 tgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtattttttcataagaataaata 17886796  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 27552128 - 27552071
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattttt 77  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||    
T  27552128 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 27552071  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 8315521 - 8315466
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattt 75  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||    
T  8315521 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 8315466  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 8320060 - 8319987
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattt-ttat-tagaatcaataa 91  Q
    ||||||||||| |||||| ||||| |||||||||||||||| ||||||||| |||| |||| ||||||||||||    
T  8320060 tgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttcttatgtagaatcaataa 8319987  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 27574756 - 27574699
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatattttt 77  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||| | ||||||    
T  27574756 tgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacattttt 27574699  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 17780054 - 17780110
Alignment:
Q  20 tgtgcttcaagcaacttaactagacattgtatataagctacttcctttgtatatttt 76  Q
    |||||||||||||||||| ||||| |||||||||||||||  ||||||||| |||||    
T  17780054 tgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacatttt 17780110  T

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