View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17296_low_4 (Length: 399)
Name: NF17296_low_4
Description: NF17296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17296_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 50970186 - 50969816
Alignment:
| Q |
11 |
cagagacggaaccaaattttcttttactaagggtgtggaaaaccaaaggaaaattctattgtgacaataccacgacagggcactgtggcggcggctggaa |
110 |
Q |
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| T |
50970186 |
cagagacggaaccaaattttcttttactaagggtgtggaaaaccaaaggaaaattctattgtgacaataccacgacagggcactgtggcggcggctggaa |
50970087 |
T |
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| Q |
111 |
atgaagtcataatctcatattttgcattgccataatgcttttcttttgtcatgtaagttctcctggatgagttatgattccgttgtagtttccatgataa |
210 |
Q |
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| T |
50970086 |
atgaagtcataatctcatattttgcattgccataatgcttttcttttgtcatgtaagttctcctggatgagttatgattccgttgtagtttccatgataa |
50969987 |
T |
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| Q |
211 |
atgtttttctttaagtcaattgaaagaaatatttaaatcaaagagaatatttctctttgatttaaaacattggataaatgttttacttacaataaatact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969986 |
atgtttttctttaagtcaattgaaagaaatatttaaatcaaagagaatatttctctttgatttaaaacattggataaatgttttacttacaataaatact |
50969887 |
T |
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| Q |
311 |
ttccttcaaggtcacttgctctgactcttaaatcgaagagaatgcttgaaatagacagttggttttccttt |
381 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969886 |
ttccttcaaggtcacttgctcagactcttaaatcgaagagaatgcttgaaatagacagttggttttccttt |
50969816 |
T |
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