View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17296_low_8 (Length: 238)
Name: NF17296_low_8
Description: NF17296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17296_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 45568647 - 45568857
Alignment:
| Q |
9 |
gaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaaaacaag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45568647 |
gaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaaaacaag |
45568746 |
T |
|
| Q |
109 |
cttttggctgtctctttagttcttgccttaccatttgttaaataatgttctcggatcctagtttttgcttcctttttcttttgtttctctctccactgtg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45568747 |
cttttggctgtctctttagttcttgccttaccatttgttaaataatgttcttggatcctagtttttgcttcctttttcttttgtttctctctccactgtg |
45568846 |
T |
|
| Q |
209 |
ttttaacctac |
219 |
Q |
| |
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||||||||||| |
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|
| T |
45568847 |
ttttaacctac |
45568857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 45093956 - 45094160
Alignment:
| Q |
9 |
gaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaaaacaag |
108 |
Q |
| |
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|||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||| ||||||||| |
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| T |
45093956 |
gaaatgaagaccaacatctattttcaaaaatacagaaaaagattaaagatacccatgcaaaaccagtgtatacatagctcaatgactttttcaaaacaag |
45094055 |
T |
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| Q |
109 |
cttttggctgtctctttagttcttgccttaccatttgttaaataatgttctcggatcctagtttttgcttcctttttcttttgtttctctctccactgtg |
208 |
Q |
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|||| || |||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
45094056 |
ctttgcgccgtctctctagttcttgccttaccattttttaaataatgtactcggatcctagtttttgcttcctatttcttttgtttctctttccactgtg |
45094155 |
T |
|
| Q |
209 |
tttta |
213 |
Q |
| |
|
||||| |
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|
| T |
45094156 |
tttta |
45094160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 44641439 - 44641537
Alignment:
| Q |
9 |
gaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaaaacaa |
107 |
Q |
| |
|
|||||| ||| |||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||||| |
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| T |
44641439 |
gaaatggacaccaacatatattttcgaaaatacagaaaaagattaaagatacaccttcagcaccaatgtatacatagctcaataacctttacaaaacaa |
44641537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 44666909 - 44667112
Alignment:
| Q |
9 |
gaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataa-cttttacaaaacaa |
107 |
Q |
| |
|
|||||| ||| |||||| |||||| ||||||| ||||| |||||||||||||| | ||||||| ||||||| |||||||||| |||||||||||||| |
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| T |
44666909 |
gaaatggacaccaacatatattttcaaaaataaagaaa--gattaaagatacaccttcagcaccacggtatacacagctcaataaacttttacaaaacaa |
44667006 |
T |
|
| Q |
108 |
gcttttggctgtctctttagttcttgccttaccatttgttaaataatgttctcggatcctagtttttgcttcctttttcttttgtttctctctccactgt |
207 |
Q |
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||||| ||| |||||| |||||||| ||||| ||| || | | |||||||||||||||||||||||||||||||||||| ||| | ||||| |
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| T |
44667007 |
gctttgggccgtctctctagttcttacctta-catgctttgga-----ctttcggatcctagtttttgcttcctttttcttttgtttttcttttgactgt |
44667100 |
T |
|
| Q |
208 |
gttttaacctac |
219 |
Q |
| |
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|||||| ||||| |
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|
| T |
44667101 |
gttttagcctac |
44667112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 44686233 - 44686436
Alignment:
| Q |
9 |
gaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataa-cttttacaaaacaa |
107 |
Q |
| |
|
|||||| ||| |||||| |||||| ||||||| ||||| |||||||||||||| | ||||||| ||||||| |||||||||| |||||||||||||| |
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| T |
44686233 |
gaaatggacaccaacatatattttcaaaaataaagaaa--gattaaagatacaccttcagcaccacggtatacacagctcaataaacttttacaaaacaa |
44686330 |
T |
|
| Q |
108 |
gcttttggctgtctctttagttcttgccttacca--tttgttaaataatgttctcggatcctagtttttgcttcctttttcttttgtttctctctccact |
205 |
Q |
| |
|
||||| ||| ||||| |||||||| |||||| | |||| | | |||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
44686331 |
gctttgggccatctctctagttcttaccttacaagctttg--------ggctttcggatcctagtttttgcttcctttttcttttgtttttcttttgact |
44686422 |
T |
|
| Q |
206 |
gtgttttaacctac |
219 |
Q |
| |
|
|||||||| ||||| |
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| T |
44686423 |
gtgttttagcctac |
44686436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 45103093 - 45103228
Alignment:
| Q |
10 |
aaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagat--------acacatgcagcaccggtgtata--catagctcaataactttta |
99 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||||||||| || |||||||||||||| |||||| |||||||||||||| ||| |
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|
| T |
45103093 |
aaatggacatcaacacagattttaaaaaatacataaaaagattaaacatgatactgcacacatgcagcaccaatgtatatacatagctcaataacctttg |
45103192 |
T |
|
| Q |
100 |
caaaacaagcttttggctgtctctttagttcttgcc |
135 |
Q |
| |
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|||||||||||| | |||| ||| ||||||||||| |
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| T |
45103193 |
caaaacaagcttcagactgtatctctagttcttgcc |
45103228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 44641587 - 44641635
Alignment:
| Q |
164 |
tcctagtttttgcttcctttttcttttgtttctctctccactgtgtttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | |||||||||| |
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|
| T |
44641587 |
tcctagtttttgcttcctttttcttttgtttttcttttgactgtgtttt |
44641635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 9797366 - 9797553
Alignment:
| Q |
30 |
tttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacata----gctcaataacttttacaaaacaagcttttggct-gtctctt |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||| ||| |||||| |
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|
| T |
9797366 |
tttaaaaaatacagaaacagattaaagatacacatgcagcaccagtgtatacatacatagcataataatctttgcaaaacaagctttgggcccgtctctc |
9797465 |
T |
|
| Q |
125 |
tagttcttgccttaccatttgttaaataatgtt-ctcggatcctagtttttgcttcctttttcttttgtttctctctccactgtgttt |
211 |
Q |
| |
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|||||||| ||||||||| |||||||||||||| || | |||||||||||||||||||||||| | ||||||||| | |||| ||||| |
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|
| T |
9797466 |
tagttcttcccttaccatgtgttaaataatgtttcttgaatcctagtttttgcttcctttttcatctgtttctcttttcactatgttt |
9797553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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