View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17298_high_2 (Length: 569)
Name: NF17298_high_2
Description: NF17298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17298_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 24144923 - 24144373
Alignment:
| Q |
18 |
gttggttcatcaagaaacagaatggaaggattgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24144923 |
gttggttcatcaagaaacagaatggaaggattgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaat |
24144824 |
T |
|
| Q |
118 |
cgccaatcatagtattttggcacctgttttcatgcatacaatacaaaactattggcttctatatctca--aataatatctctatatttgttgtaatgctt |
215 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
24144823 |
caccaatcatagtattttggcacctgttttcatgcatacaatacaaaactattggcttctataactcagaaataatatctctatatttgttgtaatgctt |
24144724 |
T |
|
| Q |
216 |
atattagggtctgggtcaatagtcatgtggtctgaccagcgacccattgt--------ttcgaccgatgacctagtgacctaatgccttgaccgggtcga |
307 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
24144723 |
atattagtgtctgggtcaatagtcatgcggtctgaccagtgacccattgagccattggtccgaccaatgacctagtgacccaatgccttgaccgggtcga |
24144624 |
T |
|
| Q |
308 |
tcaccggttcgggttttaaaacaccagttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttcc |
407 |
Q |
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|
|||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24144623 |
tcactggtccgggttttaaaacactagttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttcc |
24144524 |
T |
|
| Q |
408 |
ttagtgaatgtcttcggtagtcttaaccgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaacccta |
507 |
Q |
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| T |
24144523 |
ttagttaatgtcttcggtagtcttaaccgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaacccta |
24144424 |
T |
|
| Q |
508 |
tcctgcaatcatatgcttgttgtaagtcacattgagctctgactaattcat |
558 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24144423 |
tcctgcaatcatatgcttgttgtaagtcacattgagctctgactaattcat |
24144373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 24126697 - 24126536
Alignment:
| Q |
18 |
gttggttcatcaagaaacagaatggaaggattgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||| ||| |
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|
| T |
24126697 |
gttggttcatcaagaaacagaatggaaggattgattataatctcattaccaatacaaactctcttcctctctccaccggatactccacgaacaaatgaac |
24126598 |
T |
|
| Q |
118 |
cgccaatcatagtattttggcacctgttttcatgcatacaatacaaaactattggcttctat |
179 |
Q |
| |
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| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24126597 |
caccgatcatagtatcttggcacctgttttcatgcatacaatacaaaactattggcttctat |
24126536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 335 - 534
Target Start/End: Complemental strand, 24126481 - 24126278
Alignment:
| Q |
335 |
ttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaac |
434 |
Q |
| |
|
||||| || |||||||||||| || || ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| || || |||||| |
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| T |
24126481 |
ttattgtgcaaccatttacctttctaatccaagctcatagatgacatctaaagctctttgttccttttgttccttagttaatgtctttggaagccttaac |
24126382 |
T |
|
| Q |
435 |
cgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgca----atcatatgcttgttgt |
530 |
Q |
| |
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|| || | ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
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|
| T |
24126381 |
cgagccgcgtacgttaatgtctctttcacagttaggtgaggaaacaaaacatcatcttgtgtcacaaatcctatcctgcaagtcatcatatgcttcttgt |
24126282 |
T |
|
| Q |
531 |
aagt |
534 |
Q |
| |
|
|||| |
|
|
| T |
24126281 |
aagt |
24126278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 18315497 - 18315536
Alignment:
| Q |
291 |
tgccttgaccgggtcgatcaccggttcgggttttaaaaca |
330 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| |
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| T |
18315497 |
tgccttgaccggatcgatcaccggtccgggttttaaaaca |
18315536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 43532779 - 43532915
Alignment:
| Q |
18 |
gttggttcatcaagaaacagaatggaaggattgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaat |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| | ||||| ||| |
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|
| T |
43532779 |
gttggttcatcaagaaacagaagagaaggattgattataatctcatttccaatacaaactctcttcctctctccaccagatactcctcggacaaaggaac |
43532878 |
T |
|
| Q |
118 |
cgccaatcatagtattttggcacctgttttcatgcat |
154 |
Q |
| |
|
| || |||||||| | ||||||||| ||| ||||||| |
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|
| T |
43532879 |
ctcctatcatagtgtcttggcacctatttccatgcat |
43532915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 348 - 513
Target Start/End: Original strand, 43532976 - 43533141
Alignment:
| Q |
348 |
atttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaaccgtgctgtgtatg |
447 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| ||||||| |||||| || || || || ||||| || || | ||||| || |||| |||| |
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|
| T |
43532976 |
atttacctctccaatcctagctcatagataacatctaaagctctttgttccttctgctctttggttaatgtttttggcaaccttaaacgagctgcatatg |
43533075 |
T |
|
| Q |
448 |
tcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgc |
513 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||| |
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|
| T |
43533076 |
tcaatgtttctttcacagttaggtgaggaaacagaacatcatcttgtgtcacaaatccaatcctgc |
43533141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 29685536 - 29685492
Alignment:
| Q |
228 |
gggtcaatagtcatgtggtctgaccagcgacccattgtttcgacc |
272 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||| ||||||| |
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|
| T |
29685536 |
gggtcaatagtcatgcggtccgaccagtgacccattgattcgacc |
29685492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 40991355 - 40991458
Alignment:
| Q |
227 |
tgggtcaatagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaa |
326 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||| | ||||| ||| | ||||| | | ||||||||||||||||| |||||| |||||||||| |
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|
| T |
40991355 |
tgggtcaatagtcatgcggtccgaccagtgacccattggtccgaccactgatccagtgatccagtgccttgaccgggtcgactaccggtccgggttttaa |
40991454 |
T |
|
| Q |
327 |
aaca |
330 |
Q |
| |
|
|||| |
|
|
| T |
40991455 |
aaca |
40991458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 29538129 - 29538078
Alignment:
| Q |
279 |
ctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaaca |
330 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
29538129 |
ctagtgacccagtgccttgatcgggtcgatcaccggtccgggttttaaaaca |
29538078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 52163305 - 52163366
Alignment:
| Q |
269 |
gaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaaca |
330 |
Q |
| |
|
|||| |||| ||||| ||| | ||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
52163305 |
gaccaatgaactagtaacccagtgccttgaccgtgtcgatcaccggtccgggttttaaaaca |
52163366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 10308728 - 10308830
Alignment:
| Q |
227 |
tgggtcaatagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaa |
326 |
Q |
| |
|
|||||||||||||||| |||| |||||| || |||||| | |||| | |||| ||||||||| |||||||||| | |||| |||| | |||||||||| |
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|
| T |
10308728 |
tgggtcaatagtcatgcggtccgaccagtgatccattggtctgacc-acgacccagtgacctagtgccttgaccagatcgactaccgatccgggttttaa |
10308826 |
T |
|
| Q |
327 |
aaca |
330 |
Q |
| |
|
|||| |
|
|
| T |
10308827 |
aaca |
10308830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 46210548 - 46210587
Alignment:
| Q |
291 |
tgccttgaccgggtcgatcaccggttcgggttttaaaaca |
330 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46210548 |
tgccttgaccgggtcgatcaccggtccgggttttaaaaca |
46210587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 5194003 - 5194098
Alignment:
| Q |
228 |
gggtcaatagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttt |
323 |
Q |
| |
|
||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||| ||| ||| | | ||||||| ||||||||||||||||| ||||| |
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|
| T |
5194003 |
gggtcaataatcatgcggtttgaccaatgacccattggttcgaccactgacccagtaacccagtaccttgactgggtcgatcaccggttcaggttt |
5194098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 41266855 - 41266902
Alignment:
| Q |
283 |
tgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaaca |
330 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
41266855 |
tgacccaatgccttgaccgggtcgactaccggtccgggttttaaaaca |
41266902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 6269706 - 6269626
Alignment:
| Q |
235 |
tagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggt |
315 |
Q |
| |
|
|||||||| ||||||||||| |||||| || |||| | |||| | || |||| ||||| |||||||| |||||||||||| |
|
|
| T |
6269706 |
tagtcatgcggtctgaccagtgacccactgattcggcaaatgatccagcgacccaatgctttgaccggatcgatcaccggt |
6269626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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