View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17298_high_4 (Length: 385)

Name: NF17298_high_4
Description: NF17298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17298_high_4
NF17298_high_4
[»] chr4 (3 HSPs)
chr4 (103-366)||(13130229-13130492)
chr4 (105-187)||(12609371-12609452)
chr4 (288-350)||(40117938-40118000)
[»] chr1 (1 HSPs)
chr1 (116-366)||(18828843-18829092)
[»] chr3 (6 HSPs)
chr3 (181-350)||(13592179-13592348)
chr3 (199-350)||(8772044-8772195)
chr3 (185-326)||(19165750-19165891)
chr3 (234-343)||(19577716-19577825)
chr3 (116-170)||(19577836-19577889)
chr3 (116-149)||(8772013-8772046)
[»] chr7 (5 HSPs)
chr7 (212-366)||(13251116-13251270)
chr7 (155-347)||(20580899-20581091)
chr7 (116-189)||(19202934-19203006)
chr7 (194-311)||(22523381-22523499)
chr7 (117-173)||(1586983-1587038)
[»] chr2 (5 HSPs)
chr2 (162-366)||(25533676-25533880)
chr2 (245-311)||(32442596-32442662)
chr2 (116-172)||(16816206-16816261)
chr2 (116-172)||(16855363-16855418)
chr2 (116-188)||(28923007-28923078)
[»] chr8 (4 HSPs)
chr8 (104-189)||(24720857-24720941)
chr8 (116-189)||(26828280-26828352)
chr8 (127-189)||(14998308-14998369)
chr8 (116-189)||(25232132-25232204)
[»] chr6 (3 HSPs)
chr6 (232-304)||(28587366-28587438)
chr6 (249-325)||(12973408-12973485)
chr6 (116-189)||(21842993-21843065)
[»] chr5 (3 HSPs)
chr5 (116-177)||(25404972-25405032)
chr5 (116-188)||(19054586-19054657)
chr5 (117-188)||(16783291-16783361)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 103 - 366
Target Start/End: Complemental strand, 13130492 - 13130229
Alignment:
Q  103 gataatggatcgtctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttgcgtcttgagcccg 202  Q
    |||||||| ||  |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  13130492 gataatgggtcacctcccattcagcgtttgtttaacgtctgagtccccgacgatcaataggttacctcctacccaacacttcttttacgtcttgagcccg 13130393  T
Q  203 acggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacaca 302  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13130392 acggttcccatggattgcctcccatgcaacacttcattttacgtttattagctcgacgcctcgatcctcttagggtggcttgtatgaaagaaagaacaca 13130293  T
Q  303 tcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgtt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130292 tcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgtt 13130229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 12609371 - 12609452
Alignment:
Q  105 taatggatcgtctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttt 187  Q
    |||||||||| ||||||||||||||||| ||||||||||||| | ||||| ||||||||||  |||||||| | |||||||||    
T  12609371 taatggatcgcctcccattcaacgcttggttaacgtctgagt-ctcgacggtcaataggttgtctcctatcaagcgcttcttt 12609452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 40117938 - 40118000
Alignment:
Q  288 gaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggca 350  Q
    ||||||||||||||||| |||||| | || |||||||| || ||||| |||||||||||||||    
T  40117938 gaaagaaagaacacatcctccttccttttcctcttgtttaacaggaattccatgaatttggca 40118000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 116 - 366
Target Start/End: Original strand, 18828843 - 18829092
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttgcgtcttgagcccgacggttcccatgg 215  Q
    |||||||||| |||||||||||||||||| ||||  ||  |||||||||| |||||||| || |||||||||| |||||| || | |||||||||||| |    
T  18828843 ctcccattcagcgcttgtttaacgtctgattccca-actctcaataggttgcctcctattcagcgcttcttttacgtcttaagtctgacggttcccatag 18828941  T
Q  216 gttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatct 315  Q
    ||||||||||||||  | |||||||| | || ||||| || |||||||||||||| ||||||| |||| ||||||||||| ||||||||| ||||| |||    
T  18828942 gttgcctcccatgcggcgcttcatttaacgtctattatcttgacgcctcgatcctgttagggtggcttatatgaaagaaataacacatcacccttcctct 18829041  T
Q  316 ttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgtt 366  Q
    |||||||||||  ||||||||||||||| || | |||||||| ||||||||    
T  18829042 ttctcttgttccgaaggaactccatgaactttgtaaggagaattaagtgtt 18829092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 181 - 350
Target Start/End: Original strand, 13592179 - 13592348
Alignment:
Q  181 cttcttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttg 280  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| | || |||||||| ||||||| |||||| ||||||| |    
T  13592179 cttcttttacgtcttgagcccaacggttcccatgggttgcctcccatgcaatacttcatttgacgtctattagcttgacgccttgatcctgttagggtgg 13592278  T
Q  281 cttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggca 350  Q
    | | ||||||||||||||||||||||||| | | ||||||||||||  ||||||||||||||||||||||    
T  13592279 cctatatgaaagaaagaacacatcatcctccctttttctcttgttcggaaggaactccatgaatttggca 13592348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 8772044 - 8772195
Alignment:
Q  199 cccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaa 298  Q
    ||||| ||||||||||| |||||||||||||| | ||| || | |   |||||||||| ||||||| ||||| ||||||| |||| ||  ||||||||||    
T  8772044 cccgaaggttcccatggattgcctcccatgcagcgctttatataacaattattagctcaacgcctcaatcctgttagggtggcttatacaaaagaaagaa 8772143  T
Q  299 cacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggca 350  Q
    ||||||||| ||| |||||||||||||   |||||||||||||| |||||||    
T  8772144 cacatcatctttcctctttctcttgtttggaaggaactccatgagtttggca 8772195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 326
Target Start/End: Complemental strand, 19165891 - 19165750
Alignment:
Q  185 ttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttg 284  Q
    |||| ||||||||||| ||  ||||||||||||||||||||||||| | |||||||| | || ||||||||||||| |||  |||| ||||| |  | ||    
T  19165891 ttttacgtcttgagcctgatagttcccatgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacgactcagtcctgttaggctgacatg 19165792  T
Q  285 tatgaaagaaagaacacatcatccttcatctttctcttgttc 326  Q
    ||| ||||||||||||||||||||||| |  |||||||||||    
T  19165791 tataaaagaaagaacacatcatccttccttcttctcttgttc 19165750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 19577825 - 19577716
Alignment:
Q  234 cttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaagga 333  Q
    |||||||| | || ||||||||||||||| | ||||| ||||||| ||||  |||||||||||||||||  ||||||| |||||||||||||    ||||    
T  19577825 cttcatttaacgtctattagctcgacgccccaatcctgttagggtggcttaaatgaaagaaagaacacacaatccttcttctttctcttgttagggagga 19577726  T
Q  334 actccatgaa 343  Q
    ||||||||||    
T  19577725 actccatgaa 19577716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 19577889 - 19577836
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctc 170  Q
    |||||||||| |||||||||||||||||||| || |||| |||||||||| ||||    
T  19577889 ctcccattcagcgcttgtttaacgtctgagt-ccagacggtcaataggttgcctc 19577836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 8772013 - 8772046
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccc 149  Q
    ||||||||||||||||||||||| ||||||||||    
T  8772013 ctcccattcaacgcttgtttaacatctgagtccc 8772046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 212 - 366
Target Start/End: Complemental strand, 13251270 - 13251116
Alignment:
Q  212 atgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttc 311  Q
    ||||||||||||||||||| | |||||||| | || |||||||||||| |||||||||| ||| ||| |||| ||||||| |||||||||||||||||||    
T  13251270 atgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacacctcgatcctattacggtggcttatatgaaataaagaacacatcatccttc 13251171  T
Q  312 atctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgtt 366  Q
     |||||||||||||   |||||||||||||||||| |||||||||| ||||||||    
T  13251170 ctctttctcttgtttggaaggaactccatgaattttgcaaggagaattaagtgtt 13251116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 347
Target Start/End: Original strand, 20580899 - 20581091
Alignment:
Q  155 atcaataggttacctcctatccaacgcttcttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagc 254  Q
    ||||||||||| | |||||  || |||||||||| ||| |||| ||||| |||| |||||||||| | |||||||| | || ||||| | || |||||||    
T  20580899 atcaataggttgcatcctactcagcgcttcttttacgtattgatcccgatggtttccatgggttgtcgcccatgcatcgctccatttaacgtctattagc 20580998  T
Q  255 tcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttg 347  Q
    ||||| ||| |||| ||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  20580999 tcgaccccttgatcatcttagggtggcctgtatgaaagaaagaacacatcaaccttcctctttctcttgttcggaaggaactccatgaatttg 20581091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 19202934 - 19203006
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 189  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||||||    
T  19202934 ctcccattcagcgcttgtttaacgtctgagt-cccgacggtcaataggttgcctcctattcgacgcttcttttg 19203006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 311
Target Start/End: Complemental strand, 22523499 - 22523381
Alignment:
Q  194 ttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgcctcgatc-ctcttagggttgcttgtatgaaag 292  Q
    ||||||| ||||| || ||||||||||||||||||||||||||  ||| | || |||||| | | |||||| | | || ||||||| |||||||||||||    
T  22523499 ttgagcctgacggatctcatgggttgcctcccatgcaacactttgtttaacgtctattagtttgtcgcctcaaccactgttagggtggcttgtatgaaag 22523400  T
Q  293 aaagaacacatcatccttc 311  Q
    ||| |||| ||| ||||||    
T  22523399 aaataacatatcctccttc 22523381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 1586983 - 1587038
Alignment:
Q  117 tcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctccta 173  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||    
T  1586983 tcccattcagcgcttgtttaacgtctcagt-cccgacgatcaataggttgcctccta 1587038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 366
Target Start/End: Original strand, 25533676 - 25533880
Alignment:
Q  162 ggttacctcctatccaacgcttcttttgcgtcttgagcccgacggttcccatgggttgcctcccatgcaacacttcattttatgtttattagctcgacgc 261  Q
    |||| ||||| || || |||||||||| ||||||||| | ||| | |||||| |||||||||||||||| | |||||||| | || |||||||| |||||    
T  25533676 ggttgcctcccattcagcgcttcttttacgtcttgagtctgacaggtcccataggttgcctcccatgcagcgcttcatttaacgtctattagcttgacgc 25533775  T
Q  262 ctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaa 361  Q
    || |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||   |||||||| |||||| || | ||| |||| |||    
T  25533776 cttgatcctgttagggtggcttatatgaaagaaagaacacatcatccttcttctttctcttgttaggaaggaacttcatgaactttgtaagaagaattaa 25533875  T
Q  362 gtgtt 366  Q
    |||||    
T  25533876 gtgtt 25533880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 32442662 - 32442596
Alignment:
Q  245 gtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatcatccttc 311  Q
    |||| ||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||    
T  32442662 gtttgttagctcgacgcctcaaccctattagggtggcttgtatgaaagaaagaacacatcatccttc 32442596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 16816206 - 16816261
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcct 172  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||||||    
T  16816206 ctcccattcagcgcttgtttaacgtcttagt-cccgatgatcaataggtttcctcct 16816261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 16855363 - 16855418
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcct 172  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||||||    
T  16855363 ctcccattcagcgcttgtttaacgtcttagt-cccgatgatcaataggtttcctcct 16855418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 28923007 - 28923078
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttctttt 188  Q
    ||||||||||  | ||||||||||||||||| ||||||||| |||||||  |||||||| || | ||||||||    
T  28923007 ctcccattcagtgtttgtttaacgtctgagt-cccgacgattaataggtggcctcctattcatcacttctttt 28923078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 24720941 - 24720857
Alignment:
Q  104 ataatggatcgtctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 189  Q
    ||||||| | |||||| ||| | ||||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||    
T  24720941 ataatgggttgtctcctattaagcgcttgtttaacgtctgagtccc-gacggtcaataagttgcctcctattcaacgcttcttttg 24720857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 26828352 - 26828280
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 189  Q
    ||||||||||||||||||||||||| ||||| || |||| |||||||||| ||||||||  |||||||||||||    
T  26828352 ctcccattcaacgcttgtttaacgtatgagt-cctgacggtcaataggttgcctcctatttaacgcttcttttg 26828280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 14998308 - 14998369
Alignment:
Q  127 cgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 189  Q
    |||||||||||||||||| | ||||||| ||||||||||  ||||||| |||| |||||||||    
T  14998308 cgcttgtttaacgtctga-ttcccgacggtcaataggttgtctcctattcaacacttcttttg 14998369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 25232132 - 25232204
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 189  Q
    |||||||||||| |||||||||| | ||||| || |||| |||||||||| | |||||| ||||||||| ||||    
T  25232132 ctcccattcaacacttgtttaacatttgagt-cctgacggtcaataggttgcatcctattcaacgcttcatttg 25232204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 28587438 - 28587366
Alignment:
Q  232 cacttcattttatgtttattagctcgacgcctcgatcctcttagggttgcttgtatgaaagaaagaacacatc 304  Q
    |||||||||| | || ||||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||||||    
T  28587438 cacttcatttaacgtctattagctcgacgcctcaatcctgttagggtggcttatatgaaagagagaacacatc 28587366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 12973408 - 12973485
Alignment:
Q  249 attagctcgacgcctcgatcc-tcttagggttgcttgtatgaaagaaagaacacatcatccttcatctttctcttgtt 325  Q
    |||||||||||||||||| || | ||||||| |||| || || |||||| |||||||| |||||||||| | ||||||    
T  12973408 attagctcgacgcctcgacccttgttagggtggcttataggatagaaagcacacatcacccttcatcttccacttgtt 12973485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 21843065 - 21842993
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttcttttg 189  Q
    ||||| |||| |||||||||||||||||||| |  |||| |||||||||| |||||||| ||  ||||||||||    
T  21843065 ctccctttcagcgcttgtttaacgtctgagt-ctagacggtcaataggttgcctcctattcagtgcttcttttg 21842993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 25405032 - 25404972
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatcca 177  Q
    |||||||||||| |||||||||||||||| | ||||| | |||||||||| |||||||||||    
T  25405032 ctcccattcaacacttgtttaacgtctgaat-cccgatggtcaataggtttcctcctatcca 25404972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 19054586 - 19054657
Alignment:
Q  116 ctcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttctttt 188  Q
    |||||||||| || |||||||||||||||||||| | || ||||||| ||  |||||||||| ||||||||||    
T  19054586 ctcccattcagcgtttgtttaacgtctgagtcccag-cggtcaatagattgtctcctatccagcgcttctttt 19054657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 16783361 - 16783291
Alignment:
Q  117 tcccattcaacgcttgtttaacgtctgagtccccgacgatcaataggttacctcctatccaacgcttctttt 188  Q
    |||| |||| |||||||| ||||||||||| ||||||| | |||||||| |||||||| || ||||||||||    
T  16783361 tccccttcagcgcttgttcaacgtctgagt-cccgacggttaataggttgcctcctattcagcgcttctttt 16783291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University