View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17298_high_6 (Length: 239)
Name: NF17298_high_6
Description: NF17298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17298_high_6 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26170 - 25949
Alignment:
| Q |
1 |
ctactgcacaattcttctcttgcaccgagttgttcacgtcagaaactcgagcttcttcgtgatcttgttgatctcttgatttatcctccaagcttgttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26170 |
ctactgcacaattcttctcttgcaccgagttgttctcgtcagaaactcgagcttcttcgtgatcttgttgatctcttgatttatcctccacgcttgttaa |
26071 |
T |
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| Q |
101 |
tttgaacctctcgtcattttctcctaacccatcatcaccacttaacatcaagttttggtcttctatcttattgtttaagacaggaaacttgagaaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26070 |
tttgaacctctcgtcattttctcctaacccatcatcaccacttaacatcaagttttggtcttctatcttattgtttaagacaggaaacttgagaaaataa |
25971 |
T |
|
| Q |
201 |
accgggtcttcgatacctgatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25970 |
accgggtcttcgatacctgatt |
25949 |
T |
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