View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17298_low_1 (Length: 627)
Name: NF17298_low_1
Description: NF17298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17298_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 36414229 - 36414843
Alignment:
| Q |
1 |
tacacaagcacaaacttagcagtattattatttagcacatgagcacaaaatatcaatatgactgaccatggtgaatgtctttcctgtgcctgtttgaccg |
100 |
Q |
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| T |
36414229 |
tacacaagcacaaacttagcagtattattatttagcacatgagcacaaaatatcaatatgactgaccatggtgaatgtctttcctgtgcctgtttgaccg |
36414328 |
T |
|
| Q |
101 |
taagcgaaaacgcacacattgtgtccgtccattgcagatcttagaatcggctcgacatcaacaaaaacactttctgcagatgttcaaacaatagtaaaca |
200 |
Q |
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| T |
36414329 |
taagcgaaaacgcacacattgtgtccgtccattgcagatcttagaatcggctcgacatcaacaaaaacactttctgcagatgttcaaacaatagtaaaca |
36414428 |
T |
|
| Q |
201 |
caaacatttccacatcagtaaaatttggtgcttcaatcaaataattaaaattgggaagcaaagacaatgattttttatactagccttggcttgcttcttg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36414429 |
cagacatttccacatcagtaaaatttggtgcttcaatcaaataattaaaattgggaagcaaagacaatgattttttatactagccttggcttgcttcttg |
36414528 |
T |
|
| Q |
301 |
aggaaaaaccttatcaaactcaaaatctttccttgttcctccaaacttaacccgaattctctcggatccagctgatacaggttcagaatttcttctcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36414529 |
aggaaaaaccttatcaaactcaaaatctttccttgttcctccaaacttaacccgaattctctcggatccagctgatacaggttcagaatttcttctcttt |
36414628 |
T |
|
| Q |
401 |
tcggtcaaatgaactggtcgaattctacaaaacactctaatgctccctgaacatcataataaaattattcaaccctttaatcaaaataacataacagaat |
500 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36414629 |
tcggtcaaatgaaccggtcgaattctacaaaacactctaatgctccctgaacatcaaaataaaattattcaaccctttaatcaaaataacataacagaat |
36414728 |
T |
|
| Q |
501 |
tttaatccatacatcaacatataatagaatccccaatcaacactacaagaaccaccttttatatccaatatcttactcagtgcttctctcctcttttcat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36414729 |
tttaatccatacatcaacatataatagaatccccaatcaacactacaagaactaccttttatatccaatatcttactcagtgcttctctcctcttttcat |
36414828 |
T |
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| Q |
601 |
ccacttttctctgct |
615 |
Q |
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||||||||||||||| |
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| T |
36414829 |
ccacttttctctgct |
36414843 |
T |
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