View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17298_low_8 (Length: 218)

Name: NF17298_low_8
Description: NF17298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17298_low_8
NF17298_low_8
[»] chr5 (8 HSPs)
chr5 (1-159)||(16291634-16291792)
chr5 (167-200)||(1639865-1639898)
chr5 (167-197)||(12852121-12852151)
chr5 (167-197)||(32707917-32707947)
chr5 (167-197)||(33829755-33829785)
chr5 (167-197)||(39690849-39690879)
chr5 (167-196)||(30777609-30777638)
chr5 (167-196)||(30918380-30918409)
[»] chr3 (14 HSPs)
chr3 (5-159)||(47047466-47047623)
chr3 (167-200)||(42464990-42465023)
chr3 (167-197)||(7327714-7327744)
chr3 (167-197)||(22611460-22611490)
chr3 (167-197)||(28968512-28968542)
chr3 (167-197)||(33238725-33238755)
chr3 (167-197)||(35389752-35389782)
chr3 (167-197)||(40497332-40497362)
chr3 (167-197)||(48122827-48122857)
chr3 (167-197)||(53192500-53192530)
chr3 (167-196)||(2122706-2122735)
chr3 (167-196)||(19420907-19420936)
chr3 (167-196)||(52121182-52121211)
chr3 (167-196)||(55269099-55269128)
[»] scaffold0112 (1 HSPs)
scaffold0112 (167-200)||(42148-42181)
[»] chr8 (8 HSPs)
chr8 (167-200)||(28876649-28876682)
chr8 (167-197)||(2872996-2873026)
chr8 (167-197)||(6028489-6028519)
chr8 (167-197)||(13422210-13422240)
chr8 (167-197)||(16384619-16384649)
chr8 (167-197)||(34901468-34901498)
chr8 (167-197)||(36483437-36483467)
chr8 (167-196)||(32877439-32877468)
[»] chr4 (9 HSPs)
chr4 (167-200)||(38492342-38492375)
chr4 (167-200)||(41145614-41145647)
chr4 (167-200)||(52122952-52122985)
chr4 (167-197)||(8064195-8064225)
chr4 (167-197)||(14795025-14795055)
chr4 (167-197)||(19738699-19738729)
chr4 (167-196)||(28376998-28377027)
chr4 (171-200)||(42472652-42472681)
chr4 (167-196)||(53322339-53322368)
[»] chr1 (10 HSPs)
chr1 (167-200)||(5984229-5984262)
chr1 (167-197)||(6916960-6916990)
chr1 (167-197)||(20409640-20409670)
chr1 (167-197)||(28949327-28949357)
chr1 (167-197)||(37346934-37346964)
chr1 (167-197)||(38330429-38330459)
chr1 (167-197)||(52895799-52895829)
chr1 (167-200)||(36551493-36551526)
chr1 (167-196)||(37104122-37104151)
chr1 (166-194)||(30323716-30323744)
[»] scaffold0037 (1 HSPs)
scaffold0037 (167-197)||(27867-27897)
[»] scaffold0005 (1 HSPs)
scaffold0005 (167-197)||(44676-44706)
[»] chr7 (9 HSPs)
chr7 (167-197)||(11829688-11829718)
chr7 (167-197)||(27353920-27353950)
chr7 (167-197)||(34238157-34238187)
chr7 (167-197)||(38262998-38263028)
chr7 (167-197)||(39520799-39520829)
chr7 (167-197)||(40095649-40095679)
chr7 (167-197)||(42897001-42897031)
chr7 (167-196)||(1043158-1043187)
chr7 (167-196)||(25969396-25969425)
[»] chr6 (4 HSPs)
chr6 (167-197)||(1036912-1036942)
chr6 (167-196)||(3212479-3212508)
chr6 (167-196)||(26327157-26327186)
chr6 (167-196)||(27083987-27084016)
[»] chr2 (7 HSPs)
chr2 (167-197)||(7876716-7876746)
chr2 (167-197)||(16561802-16561832)
chr2 (167-197)||(38602408-38602438)
chr2 (167-196)||(3563853-3563882)
chr2 (167-196)||(7807461-7807490)
chr2 (167-196)||(20536777-20536806)
chr2 (167-196)||(45159385-45159414)
[»] scaffold0406 (1 HSPs)
scaffold0406 (171-200)||(13872-13901)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16291792 - 16291634
Alignment:
Q  1 atccttggtgtcatcaaagaaaccgtagatattctgttgaaccagcagaaaattctagaactagaattcataatcacatgtcaagtgtctatcatcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16291792 atccttggtgtcatcaaagaaaccgtagatattctgttgaaccagcagaaaattctagaactagaattcataatcacatgtcaagtgtctatcatcaatt 16291693  T
Q  101 agaacgaggtagtaacaataacaataattctctgttttgcagtaatgtttctggaaaaa 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  16291692 agaacgaggtagtaacaataacaataattctctgttctgcagtaatgtttttggaaaaa 16291634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 1639898 - 1639865
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  1639898 aagccccgatacttcaaaatggatgacgtactgt 1639865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 12852121 - 12852151
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  12852121 aagccccgatacttcaaaatggatgacgtac 12852151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 32707947 - 32707917
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  32707947 aagccccgatacttcaaaatggatgacgtac 32707917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 33829755 - 33829785
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  33829755 aagccccgatacttcaaaatggatgacgtac 33829785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 39690879 - 39690849
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  39690879 aagccccgatacttcaaaatggatgacgtac 39690849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 30777638 - 30777609
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  30777638 aagccccgatacttcaaaatggatgacgta 30777609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 30918380 - 30918409
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  30918380 aagccccgatacttcaaaatggatgacgta 30918409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 47047466 - 47047623
Alignment:
Q  5 ttggtgtcatcaaagaaaccgtagatattctgttgaaccagcagaaaattctagaactagaattcataatcacatgtcaagtgtctatcatcaattagaa 104  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  47047466 ttggtgtcatcgaagaaaccgtagaaattctgttgaaccaggagaaaattctagaaatagaattcataatcacatgccaagtgtccatcatcaattagaa 47047565  T
Q  105 cgaggtagtaacaataac---aataattctctgttttgcagtaatgtttctggaaaaa 159  Q
    | |||||||||||| |||   ||||||||||||||| ||||| |||||||||||||||    
T  47047566 caaggtagtaacaagaacaataataattctctgtttcgcagttatgtttctggaaaaa 47047623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 42465023 - 42464990
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  42465023 aagccccgatacttcaaaatggatgacgtactgt 42464990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 7327714 - 7327744
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  7327714 aagccccgatacttcaaaatggatgacgtac 7327744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 22611490 - 22611460
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  22611490 aagccccgatacttcaaaatggatgacgtac 22611460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 28968512 - 28968542
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  28968512 aagccccgatacttcaaaatggatgacgtac 28968542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 33238725 - 33238755
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  33238725 aagccccgatacttcaaaatggatgacgtac 33238755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 35389752 - 35389782
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  35389752 aagccccgatacttcaaaatggatgacgtac 35389782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 40497332 - 40497362
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  40497332 aagccccgatacttcaaaatggatgacgtac 40497362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 48122827 - 48122857
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  48122827 aagccccgatacttcaaaatggatgacgtac 48122857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 53192500 - 53192530
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  53192500 aagccccgatacttcaaaatggatgacgtac 53192530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 2122706 - 2122735
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  2122706 aagccccgatacttcaaaatggatgacgta 2122735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 19420907 - 19420936
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  19420907 aagccccgatacttcaaaatggatgacgta 19420936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 52121182 - 52121211
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  52121182 aagccccgatacttcaaaatggatgacgta 52121211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 55269128 - 55269099
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  55269128 aagccccgatacttcaaaatggatgacgta 55269099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 42181 - 42148
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  42181 aagccccgatacttcaaaatggatgacgtactgt 42148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 28876682 - 28876649
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  28876682 aagccccgatacttcaaaatggatgacgtactgt 28876649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 2873026 - 2872996
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  2873026 aagccccgatacttcaaaatggatgacgtac 2872996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 6028489 - 6028519
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  6028489 aagccccgatacttcaaaatggatgacgtac 6028519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 13422210 - 13422240
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  13422210 aagccccgatacttcaaaatggatgacgtac 13422240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 16384619 - 16384649
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  16384619 aagccccgatacttcaaaatggatgacgtac 16384649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 34901498 - 34901468
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  34901498 aagccccgatacttcaaaatggatgacgtac 34901468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 36483437 - 36483467
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  36483437 aagccccgatacttcaaaatggatgacgtac 36483467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 32877439 - 32877468
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  32877439 aagccccgatacttcaaaatggatgacgta 32877468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 38492375 - 38492342
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  38492375 aagccccgatacttcaaaatggatgacgtactgt 38492342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 41145614 - 41145647
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  41145614 aagccccgatacttcaaaatggatgacgtactgt 41145647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 52122985 - 52122952
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  52122985 aagccccgatacttcaaaatggatgacgtactgt 52122952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 8064225 - 8064195
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  8064225 aagccccgatacttcaaaatggatgacgtac 8064195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 14795025 - 14795055
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  14795025 aagccccgatacttcaaaatggatgacgtac 14795055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 19738699 - 19738729
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  19738699 aagccccgatacttcaaaatggatgacgtac 19738729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 28376998 - 28377027
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  28376998 aagccccgatacttcaaaatggatgacgta 28377027  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 42472681 - 42472652
Alignment:
Q  171 cccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||    
T  42472681 cccgatacttcaaaatggatgacgtactgt 42472652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 53322339 - 53322368
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  53322339 aagccccgatacttcaaaatggatgacgta 53322368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 5984229 - 5984262
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||||||    
T  5984229 aagccccgatacttcaaaatggatgacgtactgt 5984262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 6916990 - 6916960
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  6916990 aagccccgatacttcaaaatggatgacgtac 6916960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 20409670 - 20409640
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  20409670 aagccccgatacttcaaaatggatgacgtac 20409640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 28949357 - 28949327
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  28949357 aagccccgatacttcaaaatggatgacgtac 28949327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 37346964 - 37346934
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  37346964 aagccccgatacttcaaaatggatgacgtac 37346934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 38330429 - 38330459
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  38330429 aagccccgatacttcaaaatggatgacgtac 38330459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 52895829 - 52895799
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  52895829 aagccccgatacttcaaaatggatgacgtac 52895799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 36551493 - 36551526
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtactgt 200  Q
    |||||||||||||||||||| |||||||||||||    
T  36551493 aagccccgatacttcaaaattgatgacgtactgt 36551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 37104122 - 37104151
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  37104122 aagccccgatacttcaaaatggatgacgta 37104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 30323716 - 30323744
Alignment:
Q  166 aaagccccgatacttcaaaatggatgacg 194  Q
    |||||||||||||||||||||||||||||    
T  30323716 aaagccccgatacttcaaaatggatgacg 30323744  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 27897 - 27867
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  27897 aagccccgatacttcaaaatggatgacgtac 27867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 44706 - 44676
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  44706 aagccccgatacttcaaaatggatgacgtac 44676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 11829688 - 11829718
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  11829688 aagccccgatacttcaaaatggatgacgtac 11829718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 27353920 - 27353950
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  27353920 aagccccgatacttcaaaatggatgacgtac 27353950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 34238157 - 34238187
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  34238157 aagccccgatacttcaaaatggatgacgtac 34238187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 38262998 - 38263028
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  38262998 aagccccgatacttcaaaatggatgacgtac 38263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 39520799 - 39520829
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  39520799 aagccccgatacttcaaaatggatgacgtac 39520829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 40095649 - 40095679
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  40095649 aagccccgatacttcaaaatggatgacgtac 40095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 42897001 - 42897031
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  42897001 aagccccgatacttcaaaatggatgacgtac 42897031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 1043187 - 1043158
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  1043187 aagccccgatacttcaaaatggatgacgta 1043158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 25969396 - 25969425
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  25969396 aagccccgatacttcaaaatggatgacgta 25969425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 1036942 - 1036912
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  1036942 aagccccgatacttcaaaatggatgacgtac 1036912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 3212479 - 3212508
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  3212479 aagccccgatacttcaaaatggatgacgta 3212508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 26327157 - 26327186
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  26327157 aagccccgatacttcaaaatggatgacgta 26327186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 27083987 - 27084016
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  27083987 aagccccgatacttcaaaatggatgacgta 27084016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 7876716 - 7876746
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  7876716 aagccccgatacttcaaaatggatgacgtac 7876746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 16561802 - 16561832
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  16561802 aagccccgatacttcaaaatggatgacgtac 16561832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 38602438 - 38602408
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgtac 197  Q
    |||||||||||||||||||||||||||||||    
T  38602438 aagccccgatacttcaaaatggatgacgtac 38602408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 3563853 - 3563882
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  3563853 aagccccgatacttcaaaatggatgacgta 3563882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 7807490 - 7807461
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  7807490 aagccccgatacttcaaaatggatgacgta 7807461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 20536777 - 20536806
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  20536777 aagccccgatacttcaaaatggatgacgta 20536806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 45159414 - 45159385
Alignment:
Q  167 aagccccgatacttcaaaatggatgacgta 196  Q
    ||||||||||||||||||||||||||||||    
T  45159414 aagccccgatacttcaaaatggatgacgta 45159385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 13872 - 13901
Alignment:
Q  171 cccgatacttcaaaatggatgacgtactgt 200  Q
    ||||||||||||||||||||||||||||||    
T  13872 cccgatacttcaaaatggatgacgtactgt 13901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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