View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17299_high_5 (Length: 236)
Name: NF17299_high_5
Description: NF17299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17299_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 7085565 - 7085363
Alignment:
| Q |
16 |
aatattgtaaggagcaatggttttgcttgcgtgtgagagatcgaaagtgaggacaaaatgtgagatagtgtttgagtttggtgtagtgcgcatgcatttc |
115 |
Q |
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| T |
7085565 |
aatattgtaaggagcaatggttttgcttgcgtgtgagagatcgaaagtgaggacaaaatgtgagatagtgtttgagtttggtgtagtgcgcatgcatttc |
7085466 |
T |
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| Q |
116 |
aaagagtggctgccagccacaagcataagatttactagtatccatgacgcattactttcacatcatttttacctcttgaaactacaaaattttatttcat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
7085465 |
aaagagtggctgccagccacaagcataagatttactagtatccatgacgcattactttcacatcatttttacctcttaaaactgcaaaattttatttcat |
7085366 |
T |
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| Q |
216 |
tct |
218 |
Q |
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| T |
7085365 |
tct |
7085363 |
T |
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