View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17299_low_1 (Length: 514)
Name: NF17299_low_1
Description: NF17299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17299_low_1 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 43 - 514
Target Start/End: Complemental strand, 25468186 - 25467716
Alignment:
| Q |
43 |
atgatagagaattattaattaggagagagataaagacaaaatcatcaaaataaccaaactcaaagtcttcgaagtgctacccttactttggccaacatag |
142 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
25468186 |
atgagagagaattattaattatgagagagatagagacaaaatcatcaaaataatcgaactcaaagtcattgaagtgttacccttactttggccaacatag |
25468087 |
T |
|
| Q |
143 |
gtccatacctaaataatattttgtatttttatcgtgagtctaagatcattgtgatagtgaggtggaaagtcacaaccaaaatggttgtttccccttgtta |
242 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25468086 |
gtccatacccagataatattttgtatttt-atcgtgagtctaagatcattgtgacagtgaggtgcaaagtcacagccaaaatggttgtttccccttgtta |
25467988 |
T |
|
| Q |
243 |
ttactagagaggttaatatatgtaaatggttgttattacaattaattaatcaacagaannnnnnnnnnnnnnnnnnnnnngtaccgcatcacaaataaca |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||| |
|
|
| T |
25467987 |
ttactagagaggttaatatatgtaaatggttgttattacaattaattaatcaacagaaacatacatacatacgtacatacgtaccgcatcaaatatgaca |
25467888 |
T |
|
| Q |
343 |
acaagttgatataatgaaatgcatatataccttaaagagtggaatggttaagagttgaaaacaattggagcaattaagaaccttaggactggaaacaatg |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25467887 |
acaagttgatataatgaaatgcatatataccttatagagtggaatggttaagagttcaaaacaattggagcaattaagaaccttagggttggaaacaata |
25467788 |
T |
|
| Q |
443 |
acagaaacggagttattctttttgctactcatttctacgttcaccctcgcagagaagagagagtagaaagtc |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25467787 |
acagaaacggagttattctttttgctactcatttctacgttcaccctcgcagagaagagagagaagaaagtc |
25467716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 340 - 476
Target Start/End: Complemental strand, 25472957 - 25472821
Alignment:
| Q |
340 |
acaacaagttgatataatgaaatgcatatataccttaaagagtggaatggttaagagttgaaaacaattggagcaattaagaaccttaggactggaaaca |
439 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||| || || ||||||| |
|
|
| T |
25472957 |
acaacaaattgatataatgaaatgcaaatatacctgaaagagtggaatagttaagagttcaaaacaattggagcaatcaagaaatttggggttggaaacc |
25472858 |
T |
|
| Q |
440 |
atgacagaaacggagttattctttttgctactcattt |
476 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
25472857 |
atcacagaaacggagttattcttcttgctactcattt |
25472821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 25473069 - 25473014
Alignment:
| Q |
217 |
accaaaatggttgtttccccttgttattactagagaggttaatatatgtaaatggt |
272 |
Q |
| |
|
||||||||| |||||| || ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
25473069 |
accaaaatgattgtttacctttgttattaatagagaggttaatatatgtgaatggt |
25473014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 41951224 - 41951174
Alignment:
| Q |
43 |
atgatagagaattattaattaggagagagataaagacaaaatcatcaaaat |
93 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
41951224 |
atgagagagaattattgattaggagagagatagagacaaagtcatcaaaat |
41951174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 42691120 - 42691159
Alignment:
| Q |
43 |
atgatagagaattattaattaggagagagataaagacaaa |
82 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42691120 |
atgagagagaattattaattaggagagagatagagacaaa |
42691159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 28640196 - 28640263
Alignment:
| Q |
48 |
agagaattattaattaggagagagataaagacaaaatcatcaaaataaccaaactcaaagtcttcgaa |
115 |
Q |
| |
|
||||| ||||| ||||||||| ||||| ||||||| ||| |||||| ||| ||||||||||| ||||| |
|
|
| T |
28640196 |
agagagttatttattaggagaaagatagagacaaagtcaccaaaatcaccgaactcaaagtcatcgaa |
28640263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 31175983 - 31175923
Alignment:
| Q |
48 |
agagaattattaa--ttaggagagagataaagacaaaatcatcaaaataaccaaactcaaa |
106 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||||||| ||| | |||||||||||| |
|
|
| T |
31175983 |
agagaattattaaaattaggaaagagataaaaacaaaatcatgaaagtcaccaaactcaaa |
31175923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University