View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17299_low_2 (Length: 287)
Name: NF17299_low_2
Description: NF17299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17299_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 25467491 - 25467739
Alignment:
| Q |
32 |
attaatattaaggaaaaataaaatactaacgaatcccatgcataaggaatcaattaatattaatttattcaacaaatgccacaaataagaaatccgttaa |
131 |
Q |
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| T |
25467491 |
attaatattaaggaaaaataaaatactaacgaatcccatgcataaggaatcaattaatattaatttattcaacaaatgccacaaataagaaatccgttag |
25467590 |
T |
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| Q |
132 |
tttcccaataatttatttgtaaattactcactagttttctttnnnnnnnntaaaataaagggtactatttgaagcaaagaaagttgaataaattaagacg |
231 |
Q |
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| T |
25467591 |
tttcccaataatttatttgtaaattactcactagttttctttaaaaaaaataaaataaagggtactatttgaagcaaagaaagttgtataaattaagacg |
25467690 |
T |
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| Q |
232 |
gagagccttgaaaatcaaacttgaagactttctactctctcttctctgc |
280 |
Q |
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| T |
25467691 |
gagagccttgaaaatcaaacttgtagactttcttctctctcttctctgc |
25467739 |
T |
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