View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_high_1 (Length: 549)

Name: NF1729_high_1
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_high_1
NF1729_high_1
[»] scaffold0425 (2 HSPs)
scaffold0425 (150-538)||(13972-14360)
scaffold0425 (1-84)||(14426-14509)
[»] chr3 (19 HSPs)
chr3 (150-538)||(6851540-6851928)
chr3 (364-533)||(6724530-6724703)
chr3 (183-324)||(6724713-6724854)
chr3 (1-84)||(6851993-6852076)
chr3 (376-538)||(6897466-6897635)
chr3 (376-538)||(6879894-6880063)
chr3 (399-533)||(6593838-6593979)
chr3 (377-471)||(6166277-6166371)
chr3 (219-328)||(6594001-6594110)
chr3 (380-472)||(6242704-6242796)
chr3 (405-488)||(6235454-6235537)
chr3 (2-83)||(6725014-6725095)
chr3 (387-472)||(6914478-6914561)
chr3 (364-465)||(6256588-6256689)
chr3 (183-316)||(6242542-6242677)
chr3 (150-183)||(6594226-6594259)
chr3 (37-84)||(6594325-6594372)
chr3 (183-245)||(6166118-6166179)
chr3 (334-367)||(6593894-6593927)


Alignment Details
Target: scaffold0425 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 150 - 538
Target Start/End: Complemental strand, 14360 - 13972
Alignment:
Q  150 cacagttaaaggtcatcctcgccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 249  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14360 cacagttaaaggtcatcctcaccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 14261  T
Q  250 ccacaaactgcagcgtgtacacatccaaatgcagggcctaaaattagaccatacctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 349  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14260 ccacaaactgcagcgtgtacacatccaaatgcagggcgtaaaattagaccatatctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 14161  T
Q  350 tataagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatag 449  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14160 tgtaagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacaaatgagaatggatggcaacaaaatag 14061  T
Q  450 catggtttcaggtcacatgtaagtggtcaggaacgccatcggagcataaacaccacgcactgttcaacataaaagatagtatctgatga 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||    
T  14060 catggtttcaggtcacatgtaagtggtcaggaacgccatcggagcgtaaacaccatgcactgttcaacataaaagatagtatctaatga 13972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14509 - 14426
Alignment:
Q  1 tcacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 84  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14509 tcacatggaatttgattagatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 14426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 150 - 538
Target Start/End: Complemental strand, 6851928 - 6851540
Alignment:
Q  150 cacagttaaaggtcatcctcgccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 249  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6851928 cacagttaaaggtcatcctcaccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 6851829  T
Q  250 ccacaaactgcagcgtgtacacatccaaatgcagggcctaaaattagaccatacctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6851828 ccacaaactgcagcgtgtacacatccaaatgcagggtctaaaattagaccatacctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 6851729  T
Q  350 tataagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatag 449  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6851728 tgtaagtggtcaggaacagcagcattcttctggtcgtgtgtgagaggagtggtggtgccattcatctggtcacaaatgagaatggatggcaacaaaatag 6851629  T
Q  450 catggtttcaggtcacatgtaagtggtcaggaacgccatcggagcataaacaccacgcactgttcaacataaaagatagtatctgatga 538  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  6851628 catggtttcaggtcacatgtaactggtcaggaacgccatcggagcataaacaccacacactgttcaacataaaagatagtatctaatga 6851540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 364 - 533
Target Start/End: Complemental strand, 6724703 - 6724530
Alignment:
Q  364 aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtc 463  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  6724703 aacagaggcattcttctggttgtgcgtgagaggagtggttgtgccattcatctggtcacgaatgagattggatggcaacaaaatcacatggtttcaggtc 6724604  T
Q  464 acatgta---agtggtcaggaacgccatcggagcata-aacaccacgcactgttcaacataaaagatagtatct 533  Q
    |||||||   ||||||||||||| |  | |||||||| | ||||| ||||||||||| |||||| |||||||||    
T  6724603 acatgtaagtagtggtcaggaacacatttggagcatatatcaccatgcactgttcaagataaaacatagtatct 6724530  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 324
Target Start/End: Complemental strand, 6724854 - 6724713
Alignment:
Q  183 tacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagcaccacaaactgcagcgtgtacacatccaaatgca 282  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||      
T  6724854 tacaaagtcacgtgaataacaaagaggatattatctggtgaagtaaataaaaagagaattacaagcacaacaaaccgcagcgtgtacacatccaaatgtg 6724755  T
Q  283 gggcctaaaattagaccatacctgagctctgtggcggtggaa 324  Q
    |||| || ||||  ||||||| ||||||||||||||| ||||    
T  6724754 gggcatacaattgcaccatacttgagctctgtggcgggggaa 6724713  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6852076 - 6851993
Alignment:
Q  1 tcacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 84  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6852076 tcacaaggaatttgattagatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaaatggcacgaccttc 6851993  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 376 - 538
Target Start/End: Original strand, 6897466 - 6897635
Alignment:
Q  376 cttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtgg 475  Q
    |||||||| ||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  6897466 cttctggttgtgtgtgagagcagtggtcatgccattcatttggtcacgagtgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcgg 6897565  T
Q  476 tcaggaacgccatcg-------gagcataaacaccacgcactgttcaacataaaagatagtatctgatga 538  Q
    || | ||| |||| |        | || |||||||  |||||||||||||||||||||||||||| ||||    
T  6897566 tctgaaacaccattgttacatatatcacaaacaccgtgcactgttcaacataaaagatagtatcttatga 6897635  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 376 - 538
Target Start/End: Original strand, 6879894 - 6880063
Alignment:
Q  376 cttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtgg 475  Q
    ||||| || |||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  6879894 cttctagttgtgtgtaagagcagtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcgg 6879993  T
Q  476 tcaggaacgccatcggagcata-------aacaccacgcactgttcaacataaaagatagtatctgatga 538  Q
    |||| ||   ||| | | ||||       ||||||  |||||||||||||||||||||||||||| ||||    
T  6879994 tcagaaagagcattgcaacatatatcacaaacaccgtgcactgttcaacataaaagatagtatcttatga 6880063  T

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Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 399 - 533
Target Start/End: Complemental strand, 6593979 - 6593838
Alignment:
Q  399 tggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcat-- 496  Q
    |||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||| | || |||||||      
T  6593979 tggttgtgccattcatctggtcatgaatgagattgaatggcaaaaaaatcgcatggtttcaggtcacatgtaagtggtcaggaacacaattggagcatat 6593880  T
Q  497 -----aaacaccacgcactgttcaacataaaagatagtatct 533  Q
         |||||||| ||||||||||| |||||| |||||||||    
T  6593879 atcacaaacaccatgcactgttcaagataaaacatagtatct 6593838  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 6166277 - 6166371
Alignment:
Q  377 ttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaa 471  Q
    ||||||| |||||||||||  |||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  6166277 ttctggttgtgtgtgagagcggtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagatcatggtttcaggtcacatgtaa 6166371  T

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Target: chr3; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 6594110 - 6594001
Alignment:
Q  219 ggtgaactaaatgaaaaaagaattacaagcaccacaaactgcagcgtgtacacatccaaatgcagggcctaaaattagaccatacctgagctctgtggcg 318  Q
    |||||| ||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||  |||||||  |||||| ||||| ||||||||||||||    
T  6594110 ggtgaagtaaataaaaaaagaattacaagcacaacaaaccacagcgtgtacacatccaaatgtggggcctacgattagatcatacttgagctctgtggcg 6594011  T
Q  319 gtggaacaaa 328  Q
    ||||||||||    
T  6594010 gtggaacaaa 6594001  T

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Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 380 - 472
Target Start/End: Original strand, 6242704 - 6242796
Alignment:
Q  380 tggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaag 472  Q
    |||| ||||||||||| ||||||  |||||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  6242704 tggttgtgtgtgagagcagtggtcatgccattcgtttggtcacgaatgagaatggatcgcaacaagagagcatggtttcaggtcacatgtaag 6242796  T

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Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 6235454 - 6235537
Alignment:
Q  405 tgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccat 488  Q
    ||||||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||||| |||||| ||||||||    
T  6235454 tgccattcatttggtcatgaatgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtcagaaacgccat 6235537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 6725095 - 6725014
Alignment:
Q  2 cacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgacctt 83  Q
    ||||||||| ||| |  |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  6725095 cacaaggaaattggtaagatcatgatacaagcatcattagaaaataccaaatttcactttgacagcaaagtggcacgacctt 6725014  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 6914478 - 6914561
Alignment:
Q  387 gtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaag 472  Q
    |||| |||| |||||| ||||||||||| |||||||||||| |||||||||||| |  || |||||||||||||||||||||||||    
T  6914478 gtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcacatgtaag 6914561  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 465
Target Start/End: Original strand, 6256588 - 6256689
Alignment:
Q  364 aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtc 463  Q
    ||||||| ||| |||||||| |||  ||||||  |||||  ||||||| || |||||| |||||| |||||||| |||||||| ||||||||||||||||    
T  6256588 aacagcgacatccttctggttgtgcatgagagcggtggtcatgccattgatctggtcatgaatgataatggatgccaacaaaagagcatggtttcaggtc 6256687  T
Q  464 ac 465  Q
    ||    
T  6256688 ac 6256689  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 6242542 - 6242677
Alignment:
Q  183 tacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaatta---caagcaccacaaactgcagcgtgtacacatccaaat 279  Q
    |||||||||||| ||||||||||||||| ||||| ||||||  |||||  ||||| |||||   || |||| ||||   |||||||  ||||||||||||    
T  6242542 tacaaagtcacaagaataacaaagagaagattatatggtgacttaaat-taaaaacaattacatcatgcacaacaagtcgcagcgtcgacacatccaaat 6242640  T
Q  280 gcagggcctaaaattagaccatacctgagctctgtgg 316  Q
    || | ||||| ||||||||||| | |||||| |||||    
T  6242641 gcggagcctacaattagaccatgcatgagctttgtgg 6242677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 6594259 - 6594226
Alignment:
Q  150 cacagttaaaggtcatcctcgccttataattggt 183  Q
    ||||||||||||||||||||||||||||||||||    
T  6594259 cacagttaaaggtcatcctcgccttataattggt 6594226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 6594372 - 6594325
Alignment:
Q  37 attagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 84  Q
    ||||||||  |||||||||  |||||||||||||||||||||||||||    
T  6594372 attagaaattaccaaatttatctttgacaacaaagtggcacgaccttc 6594325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 6166118 - 6166179
Alignment:
Q  183 tacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattaca 245  Q
    |||||||||||| ||||||||||||||| ||||| |||||||  ||||  |||||||||||||    
T  6166118 tacaaagtcacaagaataacaaagagaagattatatggtgaatgaaat-taaaaagaattaca 6166179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 367
Target Start/End: Complemental strand, 6593927 - 6593894
Alignment:
Q  334 atggtttcaggtcacatataagtggtcaggaaca 367  Q
    ||||||||||||||||| ||||||||||||||||    
T  6593927 atggtttcaggtcacatgtaagtggtcaggaaca 6593894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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