View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_high_13 (Length: 389)

Name: NF1729_high_13
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_high_13
NF1729_high_13
[»] chr2 (36 HSPs)
chr2 (17-384)||(43808370-43808737)
chr2 (148-237)||(33267572-33267661)
chr2 (140-223)||(11307229-11307312)
chr2 (148-223)||(18962108-18962183)
chr2 (148-223)||(9478224-9478299)
chr2 (148-223)||(17952771-17952846)
chr2 (153-223)||(28902007-28902077)
chr2 (120-217)||(15171147-15171244)
chr2 (148-220)||(3102618-3102690)
chr2 (148-236)||(14209202-14209290)
chr2 (268-333)||(43456649-43456714)
chr2 (139-223)||(29430672-29430755)
chr2 (139-179)||(44606202-44606242)
chr2 (177-227)||(3458610-3458661)
chr2 (117-223)||(28803576-28803682)
chr2 (268-327)||(29430821-29430880)
chr2 (271-313)||(1625967-1626009)
chr2 (139-220)||(3423841-3423922)
chr2 (151-208)||(5998787-5998844)
chr2 (148-221)||(37053519-37053592)
chr2 (151-189)||(42826314-42826352)
chr2 (190-223)||(1160814-1160847)
chr2 (265-302)||(18525210-18525247)
chr2 (191-236)||(19243577-19243622)
chr2 (148-228)||(34339048-34339128)
chr2 (162-223)||(40722547-40722606)
chr2 (148-181)||(44458450-44458483)
chr2 (268-325)||(44606060-44606117)
chr2 (268-308)||(1741999-1742039)
chr2 (150-221)||(3673734-3673805)
chr2 (179-223)||(5043630-5043674)
chr2 (155-202)||(5045248-5045295)
chr2 (150-178)||(13864577-13864605)
chr2 (191-223)||(31740029-31740061)
chr2 (191-223)||(37292417-37292449)
chr2 (138-178)||(43965245-43965285)
[»] chr5 (30 HSPs)
chr5 (138-223)||(35135732-35135817)
chr5 (148-223)||(32059659-32059733)
chr5 (153-237)||(32197657-32197741)
chr5 (123-220)||(20982208-20982305)
chr5 (120-178)||(26516195-26516253)
chr5 (148-237)||(11684348-11684435)
chr5 (148-216)||(29014681-29014749)
chr5 (148-223)||(36539671-36539746)
chr5 (150-221)||(37063146-37063217)
chr5 (154-221)||(41277422-41277490)
chr5 (138-189)||(4991048-4991098)
chr5 (282-333)||(7550460-7550511)
chr5 (273-308)||(8090004-8090039)
chr5 (268-322)||(11297149-11297203)
chr5 (275-325)||(12407680-12407730)
chr5 (148-214)||(29365544-29365609)
chr5 (266-316)||(37611174-37611224)
chr5 (266-316)||(37787904-37787954)
chr5 (148-220)||(6733966-6734037)
chr5 (149-217)||(7096203-7096271)
chr5 (120-189)||(33961600-33961668)
chr5 (266-339)||(40534260-40534333)
chr5 (266-326)||(4619768-4619828)
chr5 (118-178)||(6738522-6738582)
chr5 (191-223)||(8158371-8158403)
chr5 (154-206)||(8571302-8571353)
chr5 (268-308)||(10152397-10152437)
chr5 (266-298)||(11406255-11406287)
chr5 (269-313)||(12242672-12242716)
chr5 (268-308)||(14980572-14980612)
[»] chr1 (29 HSPs)
chr1 (148-221)||(45107548-45107620)
chr1 (159-223)||(48830146-48830210)
chr1 (272-327)||(4033965-4034020)
chr1 (140-221)||(30815707-30815789)
chr1 (156-221)||(1232964-1233029)
chr1 (140-224)||(870962-871046)
chr1 (270-323)||(16980868-16980921)
chr1 (156-212)||(1730825-1730881)
chr1 (143-214)||(48282053-48282125)
chr1 (268-315)||(49692012-49692059)
chr1 (148-202)||(3244829-3244883)
chr1 (138-223)||(4200144-4200229)
chr1 (267-325)||(4757400-4757458)
chr1 (271-313)||(6557039-6557081)
chr1 (148-213)||(33339500-33339565)
chr1 (268-325)||(38867783-38867838)
chr1 (123-189)||(46504322-46504387)
chr1 (142-223)||(52286597-52286678)
chr1 (136-223)||(4256112-4256200)
chr1 (268-305)||(6262801-6262838)
chr1 (284-321)||(7707269-7707306)
chr1 (148-223)||(28467377-28467454)
chr1 (267-308)||(28467495-28467536)
chr1 (268-325)||(34536221-34536278)
chr1 (154-186)||(7357455-7357487)
chr1 (191-223)||(9656618-9656650)
chr1 (156-223)||(15360827-15360894)
chr1 (120-223)||(17420100-17420203)
chr1 (138-233)||(23895251-23895346)
[»] scaffold0590 (1 HSPs)
scaffold0590 (148-222)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (148-222)||(2756-2830)
[»] chr4 (32 HSPs)
chr4 (120-226)||(22684583-22684689)
chr4 (120-221)||(54414846-54414950)
chr4 (148-215)||(28581988-28582054)
chr4 (120-202)||(8422928-8423010)
chr4 (273-327)||(18628501-18628555)
chr4 (268-322)||(27123305-27123359)
chr4 (268-325)||(2996636-2996693)
chr4 (138-223)||(44319865-44319949)
chr4 (162-221)||(437504-437564)
chr4 (138-221)||(24193500-24193583)
chr4 (268-307)||(27725277-27725316)
chr4 (270-325)||(33534119-33534174)
chr4 (154-220)||(42321952-42322018)
chr4 (148-223)||(54325107-54325182)
chr4 (148-223)||(55437356-55437429)
chr4 (148-202)||(32920491-32920543)
chr4 (150-215)||(47970245-47970310)
chr4 (266-315)||(1554968-1555017)
chr4 (151-223)||(4071811-4071882)
chr4 (191-220)||(5219573-5219602)
chr4 (148-221)||(23819015-23819087)
chr4 (148-220)||(36734818-36734890)
chr4 (143-223)||(49219059-49219139)
chr4 (273-306)||(52428733-52428766)
chr4 (149-202)||(54986348-54986400)
chr4 (181-217)||(12162911-12162947)
chr4 (148-223)||(21157693-21157768)
chr4 (120-223)||(30024597-30024700)
chr4 (150-222)||(32724046-32724118)
chr4 (146-178)||(52645623-52645655)
chr4 (120-172)||(55599063-55599115)
chr4 (259-315)||(56007734-56007789)
[»] chr8 (24 HSPs)
chr8 (268-326)||(21130675-21130733)
chr8 (139-223)||(34788497-34788581)
chr8 (140-221)||(2699223-2699304)
chr8 (138-223)||(28769409-28769494)
chr8 (155-219)||(4558730-4558794)
chr8 (148-221)||(10722556-10722629)
chr8 (162-237)||(26215435-26215510)
chr8 (155-206)||(2595084-2595134)
chr8 (169-223)||(42237492-42237547)
chr8 (268-322)||(9700064-9700118)
chr8 (268-322)||(14949929-14949983)
chr8 (148-222)||(26717182-26717254)
chr8 (120-178)||(31875674-31875732)
chr8 (123-223)||(3645886-3645986)
chr8 (139-223)||(11056737-11056821)
chr8 (273-306)||(27412851-27412884)
chr8 (150-225)||(29262942-29263016)
chr8 (266-315)||(30191101-30191150)
chr8 (148-180)||(6918956-6918988)
chr8 (283-339)||(10923674-10923730)
chr8 (267-327)||(11376765-11376825)
chr8 (148-180)||(11952478-11952510)
chr8 (271-323)||(31915245-31915297)
chr8 (148-227)||(40357824-40357903)
[»] chr7 (26 HSPs)
chr7 (140-223)||(40428471-40428555)
chr7 (148-223)||(49060465-49060540)
chr7 (268-327)||(3500913-3500974)
chr7 (267-333)||(22387838-22387904)
chr7 (270-304)||(31149705-31149739)
chr7 (270-304)||(31167997-31168031)
chr7 (148-221)||(45593791-45593864)
chr7 (120-223)||(26935620-26935723)
chr7 (138-178)||(27389298-27389338)
chr7 (148-223)||(36370595-36370669)
chr7 (283-327)||(44151424-44151468)
chr7 (148-196)||(45078218-45078265)
chr7 (148-218)||(47004012-47004082)
chr7 (120-178)||(28844383-28844441)
chr7 (268-313)||(44808221-44808266)
chr7 (138-178)||(1431423-1431463)
chr7 (267-315)||(8094368-8094416)
chr7 (148-223)||(22759111-22759186)
chr7 (152-223)||(27481364-27481435)
chr7 (138-174)||(27517969-27518005)
chr7 (141-220)||(30496622-30496701)
chr7 (138-221)||(31341109-31341192)
chr7 (142-221)||(35536026-35536105)
chr7 (266-322)||(36537969-36538025)
chr7 (148-223)||(39551618-39551693)
chr7 (191-223)||(40689056-40689088)
[»] chr6 (28 HSPs)
chr6 (156-238)||(2034494-2034575)
chr6 (138-223)||(7351678-7351763)
chr6 (150-224)||(32513752-32513825)
chr6 (148-223)||(10452430-10452505)
chr6 (268-315)||(1669758-1669805)
chr6 (139-221)||(3217262-3217344)
chr6 (266-313)||(20368142-20368189)
chr6 (268-322)||(2460104-2460158)
chr6 (120-178)||(32975875-32975933)
chr6 (191-223)||(1402964-1402996)
chr6 (148-223)||(10032496-10032571)
chr6 (266-322)||(27693392-27693448)
chr6 (120-222)||(9833168-9833270)
chr6 (138-205)||(24332858-24332924)
chr6 (268-327)||(32577934-32577993)
chr6 (138-223)||(22742281-22742366)
chr6 (151-189)||(30817671-30817709)
chr6 (268-322)||(30863309-30863363)
chr6 (269-323)||(30865547-30865601)
chr6 (120-178)||(33068676-33068734)
chr6 (150-225)||(27693507-27693581)
chr6 (270-327)||(27857423-27857480)
chr6 (268-321)||(32917260-32917313)
chr6 (152-208)||(33911366-33911422)
chr6 (177-220)||(2027479-2027523)
chr6 (148-216)||(8010282-8010349)
chr6 (177-220)||(28660833-28660877)
chr6 (278-322)||(31668430-31668474)
[»] chr3 (30 HSPs)
chr3 (267-315)||(2175809-2175857)
chr3 (146-221)||(25459696-25459770)
chr3 (148-217)||(16790432-16790501)
chr3 (270-315)||(25182947-25182992)
chr3 (148-223)||(25183058-25183134)
chr3 (138-179)||(28842971-28843012)
chr3 (148-219)||(38462206-38462277)
chr3 (148-180)||(49772781-49772813)
chr3 (268-315)||(1810040-1810087)
chr3 (139-221)||(22232742-22232824)
chr3 (141-223)||(28779274-28779356)
chr3 (148-223)||(32703063-32703138)
chr3 (269-308)||(40880915-40880954)
chr3 (278-325)||(47584523-47584570)
chr3 (267-322)||(50015948-50016003)
chr3 (120-217)||(12985399-12985497)
chr3 (266-308)||(21574551-21574593)
chr3 (274-312)||(47132063-47132101)
chr3 (266-339)||(50004713-50004787)
chr3 (163-223)||(1395611-1395671)
chr3 (270-315)||(14548681-14548726)
chr3 (120-220)||(33965564-33965665)
chr3 (266-322)||(2304224-2304280)
chr3 (138-202)||(9279417-9279481)
chr3 (168-223)||(37689454-37689509)
chr3 (148-223)||(41028921-41028996)
chr3 (164-227)||(42809242-42809305)
chr3 (148-223)||(43116498-43116573)
chr3 (134-217)||(44284134-44284217)
chr3 (275-315)||(50211805-50211845)
[»] scaffold0153 (2 HSPs)
scaffold0153 (191-223)||(6568-6600)
scaffold0153 (191-223)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-237)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 43808370 - 43808737
Alignment:
Q  17 aagtaagtagtgaacataaagtgatttttatatgtgtctaggcttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808370 aagtaagtagtgaacataaagtgatttttatatgtgtctaggcttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaat 43808469  T
Q  117 agtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 216  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808470 agtttaattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 43808569  T
Q  217 ataagctgtttctataagctaataagctgaaaataacttatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808570 ataagctgtttctataagctaataagctgaaaataacttatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 43808669  T
Q  317 tttatgtcagtgaataaagtcaatctaaacatgttctcattataagttcactttaagtctcctttgct 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808670 tttatgtcagtgaataaagtcaatctaaacatgttctcattataagttcactttaagtctcctttgct 43808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 33267661 - 33267572
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataagctgtttctataagcta 237  Q
    ||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttct-ataacaaacagtaaaataaagttaaactgttttcatataagctgtttttataagcta 33267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 11307229 - 11307312
Alignment:
Q  140 taagcgcgtatcatataagtgtttatgtataagctattttttat-aacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| | |||||| ||||| |||||| |||||||||||||| |||||    
T  11307229 taagcgcttatcataaaagtgtt-atgtataagctatttttttttaacaaagataaagtaaagtcaaactattttcataaaagct 11307312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 18962183 - 18962108
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||| |||||| |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  18962183 tatcatgtaagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 9478224 - 9478299
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||||||||||||||| ||| |||||||  | |||||||||| | ||| ||||||||||||||||    
T  9478224 tatcatataagtgtttatgtataagcta-tttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 17952846 - 17952771
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||| | |||| |||||||||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  17952846 tatcatataagagcttatatataagctatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 28902007 - 28902077
Alignment:
Q  153 tataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 223  Q
    |||||||| |||||||||||||| ||||||||||| ||  ||||||||| ||||||| ||||||||||||||    
T  28902007 tataagtgcttatgtataagcta-tttttataacataagttaaaataaaattaaactgttttcatataagct 28902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 15171147 - 15171244
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcata 217  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||||||||||| | |||| ||||||| || ||||| |||||| ||| | ||||||||    
T  15171147 ttaattaagtgtttatagcataagctcgtattttataagtgtttatgtataag-ttttttctataacagaagataaattaaagtcaaaatgttttcata 15171244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 3102618 - 3102690
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 220  Q
    |||||||||| || |||||||||||||| |||||||| | ||| |||||||||||| |||||||||| ||||||    
T  3102618 tatcatataactgcttatgtataagcta-tttttatagcaaaatataaaataaagtcaaactatttttatataa 3102690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 14209202 - 14209290
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagct 236  Q
    |||||||||||||||| ||| ||||||||||   ||||||||  |||||||||| | ||||| |||||||||||||| |||| |||||||    
T  14209202 tatcatataagtgtttctgtctaagctatttca-ataacaaaagataaaataaattcaaactgttttcatataagctatttccataagct 14209290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 43456714 - 43456649
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 333  Q
    ||||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  43456714 acatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataa 43456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 29430672 - 29430755
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    |||||||  ||||||| ||| |||||||||||||||| ||| |||||||||  | ||||||||| ||||| ||||| ||||||||    
T  29430672 ataagcgtttatcatacaagggtttatgtataagcta-tttctataacaaaagttaaataaagtcaaactgttttcttataagct 29430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 44606242 - 44606202
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctatttt 179  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  44606242 ataagcgcttattatataagtgtttatgtataagctatttt 44606202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 3458610 - 3458661
Alignment:
Q  177 tttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 227  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||||||||    
T  3458610 tttttataacaaaagataaaataaagtcaaacttttttcatataagctgttt 3458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 28803682 - 28803576
Alignment:
Q  117 agtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 215  Q
    |||||||||||||||| ||  |||||  || ||||||||||||| |||| |||||| || |||  ||||| ||| |||||||||||| |||||  |||||    
T  28803682 agtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagtta-tttcgataacaaaagataaaataaagtcaaactgatttca 28803584  T
Q  216 tataagct 223  Q
    ||||||||    
T  28803583 tataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 29430821 - 29430880
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    |||||||||||| |||||||||||| |||  |||||||||  |||||| |||||||||||    
T  29430821 acatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagt 29430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 1625967 - 1626009
Alignment:
Q  271 tgtcataagttattttcataagctctctcaaatagtcttacaa 313  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
T  1625967 tgtcataagctactttcataagttctctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 3423922 - 3423841
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataa 220  Q
    ||||| || ||||||| ||||||||||||||||| |||||||  || ||||  |||||||||||| ||| |||||||||||||    
T  3423922 ataagtgcttatcatacaagtgtttatgtataagttatttttg-taccaaaagataaaataaagtcaaattattttcatataa 3423841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 5998844 - 5998787
Alignment:
Q  151 catataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 208  Q
    ||||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  5998844 catataattgtttatatataagctat-ttttataacaaaagataaaataaagttaaact 5998787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 37053519 - 37053592
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 221  Q
    ||||||||||||| |||||||||  |||||| | |||||| || |||||||||||| ||||| ||||||||||||    
T  37053519 tatcatataagtgcttatgtatagactatttct-ataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 42826314 - 42826352
Alignment:
Q  151 catataagtgtttatgtataagctattttttataacaaa 189  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  42826314 catataagtgcttatatataagctattttttataacaaa 42826352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 1160847 - 1160814
Alignment:
Q  190 cataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| ||||||||||||||||||||    
T  1160847 cataaaataaagtcaaactattttcatataagct 1160814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 18525247 - 18525210
Alignment:
Q  265 cgaacatgtcataagttattttcataagctctctcaaa 302  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18525247 cgaatatgtcataagctattttcataagctctctcaaa 18525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 19243577 - 19243622
Alignment:
Q  191 ataaaataaagttaaactattttcatataagctgtttctataagct 236  Q
    |||||||||| ||||| | |||| ||||||||||||||||||||||    
T  19243577 ataaaataaatttaaattgttttgatataagctgtttctataagct 19243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 34339048 - 34339128
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttc 228  Q
    ||||||||||||| |||||||||| || |||| |||| | ||| |||||||||||| | ||| ||||| |||||||||||||    
T  34339048 tatcatataagtgcttatgtataaact-ttttctatagctaaagataaaataaagtcagactgttttcgtataagctgtttc 34339128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 40722606 - 40722547
Alignment:
Q  162 ttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||| ||||||| |||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  40722606 ttatgcataagct-ttttttataacaaa-ataaaataaagtcgaactgttttcatataagct 40722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 44458483 - 44458450
Alignment:
Q  148 tatcatataagtgtttatgtataagctatttttt 181  Q
    |||||||||||| |||||||||||||||||||||    
T  44458483 tatcatataagtatttatgtataagctatttttt 44458450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 44606117 - 44606060
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||||| ||||||||    
T  44606117 acatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 1742039 - 1741999
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtct 308  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  1742039 acatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 3673734 - 3673805
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 221  Q
    ||||||||||| |||||||| || ||||| | ||||||||  |||||||||||||||| | ||||||||||||    
T  3673734 tcatataagtgcttatgtattagttatttct-ataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 5043674 - 5043630
Alignment:
Q  179 tttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||| ||| |||||||||||| ||||| ||||||||||||||    
T  5043674 tttataagaaagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 5045295 - 5045248
Alignment:
Q  155 taagtgtttatgtataagctattttttataac-aaacataaaataaagt 202  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  5045295 taagtgtttatgtataagctat-ttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 13864577 - 13864605
Alignment:
Q  150 tcatataagtgtttatgtataagctattt 178  Q
    |||||||||||||||||||||||||||||    
T  13864577 tcatataagtgtttatgtataagctattt 13864605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 31740061 - 31740029
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||| ||||||||||||||||||||    
T  31740061 ataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 37292449 - 37292417
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||| ||||||||||||||||||||    
T  37292449 ataaaataaagtaaaactattttcatataagct 37292417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 43965285 - 43965245
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||||| | ||||||||||||||||||| |||||||||||    
T  43965285 cataagcacttatcatataagtgtttatgaataagctattt 43965245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 35135817 - 35135732
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||| || || |||||||||||||||||||||| ||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  35135817 cataagtgcttaacatataagtgtttatgtataagatatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 32059733 - 32059659
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| ||||||||||||| |||||  |||| || |||||||||||| ||||| ||||||||||||||    
T  32059733 tatcatataagtgcttatgtataagctgtttttg-taactaagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 32197657 - 32197741
Alignment:
Q  153 tataagtgtttatgtataagctattttttataacaaacataaa-ataaagttaaactattttcatataagctgtttctataagcta 237  Q
    |||||||||||| |||||| |||||| || ||||||| ||  | ||||||| ||||||||||||||||||||||||| ||||||||    
T  32197657 tataagtgtttacgtataaactatttatt-taacaaaaatttatataaagtcaaactattttcatataagctgtttccataagcta 32197741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 20982305 - 20982208
Alignment:
Q  123 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 220  Q
    |||||||| | ||| |||||| || ||||||||||||| |||||||||||||| ||| |||||||||  |||||||||||| || |  |||||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagcta-tttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 26516195 - 26516253
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||||||| | | ||| ||||||||| ||||||||||||| |||||||||||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctattt 26516253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 11684348 - 11684435
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagcta 237  Q
    ||||||||||||| | |||||||||||| ||||||||||||| ||| || | ||| ||||| |||||||||||||| |||  ||||||||    
T  11684348 tatcatataagtgctaatgtataagcta-tttttataacaaa-atataaaatagtgaaactgttttcatataagctattttcataagcta 11684435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 29014681 - 29014749
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcat 216  Q
    ||||||||||||||| |||||||||||| ||||||| | |||| ||||||| |||| |||||||||||||    
T  29014681 tatcatataagtgttcatgtataagcta-tttttatgataaacgataaaatcaagtcaaactattttcat 29014749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 36539671 - 36539746
Alignment:
Q  148 tatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| |||||| |||||||||| ||||| | ||| |||||||||||| || || ||||||||||||||    
T  36539671 tatcatataagtgcttatgtgtaagctatttgtttatca-aaagataaaataaagtcaacctgttttcatataagct 36539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 37063217 - 37063146
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 221  Q
    |||||||| || |||||||||| |||||| | ||||||||  |||||||||||| ||||||||||||||||||    
T  37063217 tcatataaatgcttatgtataaactatttct-ataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 41277490 - 41277422
Alignment:
Q  154 ataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 221  Q
    ||||||| ||||||| ||||| |||||| ||| |||| |||||||||||| ||||| ||||||||||||    
T  41277490 ataagtgcttatgtaaaagcttttttttgtaatcaaagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 4991098 - 4991048
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 189  Q
    ||||||||  |||||||||||||||| |||||||||||| ||||||||||||    
T  4991098 cataagcgattatcatataagtgtttgtgtataagctat-ttttataacaaa 4991048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 7550511 - 7550460
Alignment:
Q  282 attttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 333  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataa 7550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 8090004 - 8090039
Alignment:
Q  273 tcataagttattttcataagctctctcaaatagtct 308  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8090004 tcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 11297203 - 11297149
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    ||||||| |||||| ||| |||||||||| ||||| |||||||||||| ||||||    
T  11297203 acatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 12407730 - 12407680
Alignment:
Q  275 ataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||||| |||||||||||||||||||||  |||| |||||| |||||||||    
T  12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtca 12407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 29365544 - 29365609
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttc 214  Q
    ||||||||||||| | |||||||||||| ||||||| | ||| |||| || ||||||||||||||||    
T  29365544 tatcatataagtgctcatgtataagcta-tttttatgataaaaataacatcaagttaaactattttc 29365609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 37611224 - 37611174
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 316  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37611224 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 37787954 - 37787904
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 316  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37787954 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 6734037 - 6733966
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 220  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||| |||| | |||||||||||    
T  6734037 tatcatataagtgtttatgcataatcta-tttttataacgaaagataaaataaag-taaattgttttcatataa 6733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 7096271 - 7096203
Alignment:
Q  149 atcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 217  Q
    |||||| ||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||| |||||||||    
T  7096271 atcatacaagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaaccattttcata 7096203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 33961600 - 33961668
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 189  Q
    ||||||||||||| |||  |||||| | |||||||||||||||| |||||||| ||  ||||||||||||    
T  33961600 ttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataaggta-cttttataacaaa 33961668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 40534260 - 40534333
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 339  Q
    |||||||||||||| || || |||||||||||  ||| ||| | |||||| ||||||||||| |||||| ||||    
T  40534260 gaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaa 40534333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 4619768 - 4619828
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 326  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || |||||  |||||||||    
T  4619768 gaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtcag 4619828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 6738582 - 6738522
Alignment:
Q  118 gtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||||||||| ||| ||| ||||| | | ||||||||||||  |||||||||||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctattt 6738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 8158403 - 8158371
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||| ||||||||||||||||    
T  8158403 ataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 8571302 - 8571353
Alignment:
Q  154 ataagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 206  Q
    ||||||||||||||||| | |||||| ||||||||| | ||||||||||||||    
T  8571302 ataagtgtttatgtatatgatatttt-tataacaaagaaaaaataaagttaaa 8571353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 10152397 - 10152437
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtct 308  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  10152397 acatgtcataagttgttttcataagctctccaaaatagtct 10152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 11406255 - 11406287
Alignment:
Q  266 gaacatgtcataagttattttcataagctctct 298  Q
    |||||| ||||||||||||||||||||||||||    
T  11406255 gaacatatcataagttattttcataagctctct 11406287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 12242716 - 12242672
Alignment:
Q  269 catgtcataagttattttcataagctctctcaaatagtcttacaa 313  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||    
T  12242716 catgtcataagttttttccataagctctctcaaataatctcacaa 12242672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 14980572 - 14980612
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtct 308  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  14980572 acatgtcataagtcatttttataagctctctcaaacagtct 14980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 45107548 - 45107620
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 221  Q
    ||||||||||||| |||| |||||||||||| | |||| ||| |||||||||||| ||||||||||||||||||    
T  45107548 tatcatataagtgcttatctataagctatttct-ataagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 48830210 - 48830146
Alignment:
Q  159 tgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||| ||||| |  || |||| |||||||||||| ||||||||||||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 4034020 - 4033965
Alignment:
Q  272 gtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| |||||| ||||    
T  4034020 gtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagt 4033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 30815789 - 30815707
Alignment:
Q  140 taagcgcgtatcatataagtg-tttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 221  Q
    ||||||| |||||||||| |  ||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  30815789 taagcgcttatcatataattactttatgtctaagct-ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 1233029 - 1232964
Alignment:
Q  156 aagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 221  Q
    ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1233029 aagtgtttatgcataagctgttttt-ataacaaaacataaaataaagttaaattattttcgtataag 1232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 870962 - 871046
Alignment:
Q  140 taagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctg 224  Q
    ||||||| ||||||||||||| |||||||||| ||| |||||||||| ||| ||||||| |||| ||  | |||||||||||||||    
T  870962 taagcgcttatcatataagtgcttatgtataaacta-tttttataacaaaagataaaattaagtcaattttttttcatataagctg 871046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 16980868 - 16980921
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 323  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgt 16980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 1730825 - 1730881
Alignment:
Q  156 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattt 212  Q
    ||||| ||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactattt 1730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 48282053 - 48282125
Alignment:
Q  143 gcgcgtatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttc 214  Q
    |||| ||||||||||||| ||||||| ||||||||| | || || ||| |||||||||||| |||||||||||    
T  48282053 gcgcttatcatataagtgcttatgtaaaagctatttctataaaagaaagataaaataaagtcaaactattttc 48282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 49692059 - 49692012
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  49692059 acatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 3244829 - 3244883
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 202  Q
    |||||| |||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  3244829 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 3244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 4200144 - 4200229
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||| | |||||| ||||||||||| |||||| || |||||||||| ||| |||||||||||| ||  | ||||||||||||||    
T  4200144 cataagcacttatcatctaagtgtttatatataagtta-tttttataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 4757400 - 4757458
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    ||||||||||||||| |||||||||| |||  ||||| |||| |||||| |||||||||    
T  4757400 aacatgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtca 4757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 6557039 - 6557081
Alignment:
Q  271 tgtcataagttattttcataagctctctcaaatagtcttacaa 313  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  6557039 tgtcataagctattttcataagttctctcaaatagtctcacaa 6557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 33339565 - 33339500
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactatttt 213  Q
    ||||||||| |||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||||||    
T  33339565 tatcatataggtgtttatgtataagcta-tttctataccaaaagataaaatgaagttaaactatttt 33339500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 38867838 - 38867783
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||| ||||||||||||| |||||||||||||||| ||||  |||||| |||||||||    
T  38867838 acatatcataagttatttccataagctctctcaaacagtc--acaagtgtttatgtca 38867783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 46504387 - 46504322
Alignment:
Q  123 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 189  Q
    |||||||||| ||| ||||||| | |||||||||||||||| | ||||| ||| |||||||||||||    
T  46504387 attaagtgtttatagcataagctcttatcatataagtgtttgtctataaacta-tttttataacaaa 46504322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 52286597 - 52286678
Alignment:
Q  142 agcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||| ||||||||||| | ||||| ||||| ||||| | | ||||||  ||||||||||||||||| |||||||||||||||    
T  52286597 agcgcttatcatataagcgcttatgaataagatatttct-acaacaaaagataaaataaagttaaacaattttcatataagct 52286678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 4256200 - 4256112
Alignment:
Q  136 accataagcgcgtatcat-ataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||||| || |||||| ||| ||||||||||||||||||||| | | ||||||  ||| |||||||||||| ||||||| ||||||||    
T  4256200 accataagtgcttatcatgatacgtgtttatgtataagctatttct-acaacaaaagatacaataaagttaaattattttcgtataagct 4256112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 6262801 - 6262838
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatag 305  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6262801 acatatcataagttattttcataagctctcccaaatag 6262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 7707269 - 7707306
Alignment:
Q  284 tttcataagctctctcaaatagtcttacaagtatttat 321  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  7707269 tttcataaactctctcaaataatcttacaagtatttat 7707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 28467454 - 28467377
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttt-tataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||||| | ||| |||||||||| |||||| | |||||||||  |||||||||||| ||| ||||||||||||||||    
T  28467454 tatcatacaggtgattatgtataacctatttgtgtataacaaaagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 28467495 - 28467536
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtct 308  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  28467495 aacatgtcataagttatttccataatctctcccaaatagtct 28467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 34536221 - 34536278
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||||||||||| | |||||||||||  ||||||| ||||| |||||| |||||||||    
T  34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 7357455 - 7357487
Alignment:
Q  154 ataagtgtttatgtataagctattttttataac 186  Q
    ||||| |||||||||||||||||||||||||||    
T  7357455 ataagcgtttatgtataagctattttttataac 7357487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 9656618 - 9656650
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||| ||||||||||||||||    
T  9656618 ataaaataaagttaaattattttcatataagct 9656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 15360827 - 15360894
Alignment:
Q  156 aagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||| || ||||| | ||||||||  |||||||||||| ||||| ||||||||||||||    
T  15360827 aagtgtttatgtattagttatttct-ataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 17420100 - 17420203
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatat 218  Q
    ||||||||||| | |||  |||||||| || || ||||||  |||||||||| ||| |||||||||  ||| ||||||||||||  ||| ||||||||||    
T  17420100 ttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaacta-tttttataagaaaagataaaataaagtcgaacaattttcatat 17420198  T
Q  219 aagct 223  Q
    |||||    
T  17420199 aagct 17420203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 23895251 - 23895346
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttctataa 233  Q
    ||||||| | ||||||||||||  |||||||||||||| ||| |||||| ||| |||||||||| | ||||| || ||||||| ||| ||| |||||    
T  23895251 cataagcccttatcatataagttattatgtataagcta-tttctataacaaaagataaaataaattcaaactgttctcatatatgctatttttataa 23895346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 1219 - 1145
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 222  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  1219 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 2756 - 2830
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 222  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  2756 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 22684689 - 22684583
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 218  Q
    |||||||| || | |||||||| |||| |||||||||| || || ||||||||||| ||| ||||||||||  ||||||||||| ||| | |||||||||    
T  22684689 ttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagcta-tttctataacaaacggtaaaataaagtcaaattgttttcatat 22684591  T
Q  219 aagctgtt 226  Q
    ||||||||    
T  22684590 aagctgtt 22684583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 54414846 - 54414950
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctat--tttttat-aacaaacataaaataaagttaaactattttcat 216  Q
    ||||||||||||| ||   |||||||| ||||||||||||| |||||||||||||||  ||||||| || ||| | |||||||||| || |||||||| |    
T  54414846 ttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagctattatttttataaagaaagagaaaataaagtcaatctattttcct 54414945  T
Q  217 ataag 221  Q
    |||||    
T  54414946 ataag 54414950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 28582054 - 28581988
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttca 215  Q
    ||||||| |||||||||||||||| ||||||||||  | ||| |||||||||||| ||||||||||||    
T  28582054 tatcatagaagtgtttatgtataaactattttttagca-aaagataaaataaagtcaaactattttca 28581988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 8423010 - 8422928
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 202  Q
    ||||||||||||| ||| ||||| |  |||||||||| ||| |||||||||||||||||||   || ||| ||||||||||||    
T  8423010 ttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagt 8422928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 18628555 - 18628501
Alignment:
Q  273 tcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| |||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagt 18628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 27123359 - 27123305
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  27123359 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 27123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 2996636 - 2996693
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||  ||||||||    
T  2996636 acatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtca 2996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 44319865 - 44319949
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||| | ||||||||||||| | |||||||| |||||| | |||| ||| ||||||||||||  |||| ||||||||||||||    
T  44319865 cataagcacttatcatataagtgctcatgtataaactatttct-ataaaaaagataaaataaagtcgaactgttttcatataagct 44319949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 437564 - 437504
Alignment:
Q  162 ttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 221  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| | | ||||||||||    
T  437564 ttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 24193500 - 24193583
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 221  Q
    ||||| ||| ||||||||||||  ||||||||||| || |||||| ||| ||| |||||| | ||||||||||||||||||||||    
T  24193500 cataaacgcttatcatataagtacttatgtataagtta-tttttacaacaaaatataaaacagagttaaactattttcatataag 24193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 27725277 - 27725316
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtc 307  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  27725277 acatgtcataagttatttccataagctctctcaaacagtc 27725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 33534174 - 33534119
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||||| || || |||||||||||||||||||||| ||| ||||||| ||||||||    
T  33534174 atgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtca 33534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 42322018 - 42321952
Alignment:
Q  154 ataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 220  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||||||| ||| | |||||||||||    
T  42322018 ataagtgtttatgaataagctat-ttttataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 54325182 - 54325107
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| || ||||||| |||||| |  ||  ||| |||||||||||| ||||| ||||||||||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 55437429 - 55437356
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||| | |||| |||||||||||| | |||||||  |||||||||||| ||| ||||||||||||||||    
T  55437429 tatcatataagcgattatctataagctatttct-ataacaat-ataaaataaagtcaaattattttcatataagct 55437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 32920543 - 32920491
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 202  Q
    ||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||    
T  32920543 tatcatataagtgtttatggataagctat-ttttataac-aagataaaataaagt 32920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 47970245 - 47970310
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 215  Q
    ||||||||||| |||||||||||||| ||| |||||| ||| ||||||| |||| ||||||||||||    
T  47970245 tcatataagtgcttatgtataagcta-tttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 1555017 - 1554968
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||||||||| |||||||||||  ||||||||| |||||| |||||    
T  1555017 gaacatgtcataagctattttcataaattctctcaaacagtcttgcaagt 1554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 4071811 - 4071882
Alignment:
Q  151 catataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||||| ||||| |||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  4071811 catataagtgtttatatataa-ctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 4071882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 5219602 - 5219573
Alignment:
Q  191 ataaaataaagttaaactattttcatataa 220  Q
    ||||||||||||||||||||||||||||||    
T  5219602 ataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 23819015 - 23819087
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 221  Q
    ||||||| ||||||||||||||||| || |||  |||||||| |||||||  ||| ||||| ||||||||||||    
T  23819015 tatcatacaagtgtttatgtataagtta-tttccataacaaatataaaatgtagtcaaactgttttcatataag 23819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 36734818 - 36734890
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataa 220  Q
    ||||||||||||| |||||||||| || ||| | ||||||||   ||||||||||| |||||||||||||||||    
T  36734818 tatcatataagtgcttatgtataatctctttct-ataacaaaaggtaaaataaagtcaaactattttcatataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 49219059 - 49219139
Alignment:
Q  143 gcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||| |||||||| |||| ||| ||||||| ||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  49219059 gcgcttatcatatgagtggttaggtataagttatttct-ataacaaaatataaaataaagtcaaattattttcatataagct 49219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 52428733 - 52428766
Alignment:
Q  273 tcataagttattttcataagctctctcaaatagt 306  Q
    ||||||||| ||||||||||||||||||||||||    
T  52428733 tcataagttgttttcataagctctctcaaatagt 52428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 54986348 - 54986400
Alignment:
Q  149 atcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 202  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||| |||||||    
T  54986348 atcatataagtttttatgtataagcta-tttctataacaaaaataagataaagt 54986400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 12162911 - 12162947
Alignment:
Q  181 tataacaaacataaaataaagttaaactattttcata 217  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12162911 tataacaaacataaaataaagtcaaattattttcata 12162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 21157693 - 21157768
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||||| |||||| ||||| ||||||| ||||||    
T  21157693 tatcatataagtgcttatgtatcagcta-ttttgataacaaagtataaactaaagtcaaactgttttcatgtaagct 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 30024597 - 30024700
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 218  Q
    ||||||||||||| |||  | |||||  ||||||||||||  ||||| ||||| ||||| | ||||||||  |||||||||||| ||| | |||||||||    
T  30024597 ttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttct-ataacaaaagataaaataaagtaaaattgttttcatat 30024695  T
Q  219 aagct 223  Q
    |||||    
T  30024696 aagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 32724046 - 32724118
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 222  Q
    |||||| |||| |||||| ||| |||||| |  ||  ||| |||||||||||| |||||||||||||||||||    
T  32724046 tcatatcagtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 52645623 - 52645655
Alignment:
Q  146 cgtatcatataagtgtttatgtataagctattt 178  Q
    |||||||||||||||||||||||| ||||||||    
T  52645623 cgtatcatataagtgtttatgtatgagctattt 52645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 55599063 - 55599115
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataag 172  Q
    |||||||||||   ||| ||||||||||||||| |||||||||||| ||||||    
T  55599063 ttaattaagtgcatatagcataagcgcgtatcacataagtgtttatatataag 55599115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 56007734 - 56007789
Alignment:
Q  259 gacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| ||||||||||||    
T  56007734 gacaatcga-catgtcataagttacttgtattagctctctcaaacagtcttacaagt 56007789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 21130675 - 21130733
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 326  Q
    |||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  21130675 acatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcag 21130733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 34788581 - 34788497
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    |||||||| |||||||||| || ||| |||||||||||||||   | |||| |||||||||||| ||||| ||| ||||||||||    
T  34788581 ataagcgcttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagct 34788497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 2699223 - 2699304
Alignment:
Q  140 taagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 221  Q
    ||||||| ||||||||| |||| ||| |||||| ||||| | | ||||||  |||||||||||||||||||||||||||||||    
T  2699223 taagcgcctatcatatacgtgtctatatataagttatttct-acaacaaaatataaaataaagttaaactattttcatataag 2699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 28769494 - 28769409
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||| || |||||||||| || |||||||||||||| ||  |||||||||| ||||||| |||| ||||||||||| ||||||||    
T  28769494 cataagtgcttatcatataaatgcttatgtataagcta-ttcctataacaaactataaaattaagtcaaactattttcttataagct 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 4558730 - 4558794
Alignment:
Q  155 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatata 219  Q
    |||||||||||||||||||||||| | |||| |||  |||||||||||||||| ||||||||||||    
T  4558730 taagtgtttatgtataagctatttct-ataataaaagataaaataaagttaaattattttcatata 4558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 10722556 - 10722629
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 221  Q
    ||||||||||||| || ||||||| ||  ||| ||||||||| |||||||||| | ||| ||||||||||||||    
T  10722556 tatcatataagtgcttgtgtataatcttatttatataacaaagataaaataaactaaaattattttcatataag 10722629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 26215435 - 26215510
Alignment:
Q  162 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 237  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||||||||| |||||  |||||  ||||||||    
T  26215435 ttatgtataagctatttct-ataacaaaagataaaataaagttaaactattttcgtataatatgttttcataagcta 26215510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 2595134 - 2595084
Alignment:
Q  155 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 206  Q
    |||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  2595134 taagtgtttatgtataaggttttttttataac-aagataaaataaagttaaa 2595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 42237547 - 42237492
Alignment:
Q  169 taagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||| ||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 9700064 - 9700118
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||    
T  9700064 acatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatg 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 14949929 - 14949983
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||| | ||||||    
T  14949929 acatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 26717182 - 26717254
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 222  Q
    ||||||||||||| || || |||||||| |||| |||||||  |||||||||||| |||||||||||| ||||||    
T  26717182 tatcatataagtgcttctgaataagctaatttt-ataacaag-ataaaataaagtcaaactattttcaaataagc 26717254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 31875732 - 31875674
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||| ||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||    
T  31875732 ttaatgaagcgtttatagcataagcgcttatcatataagtgcttatctataagctattt 31875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 3645986 - 3645886
Alignment:
Q  123 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 221  Q
    ||||| |||| ||| |||||| |  ||||||||||||| || ||||||||||| ||| |||||  ||| |||||| ||| | ||||||||||||||||||    
T  3645986 attaaatgtttatagcataagtgtttatcatataagtgcttgtgtataagcta-tttctataagaaaatataaaacaaaatcaaactattttcatataag 3645888  T
Q  222 ct 223  Q
    ||    
T  3645887 ct 3645886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 11056821 - 11056737
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaa-taaagttaaactattttcatataagct 223  Q
    |||||| | ||||||||||||||| ||| || |||||||| | ||||||||   |||| ||||||| |||||||||||||||||||    
T  11056821 ataagctcttatcatataagtgttcatgcatgagctatttct-ataacaaaaggaaaaataaagttgaactattttcatataagct 11056737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 27412884 - 27412851
Alignment:
Q  273 tcataagttattttcataagctctctcaaatagt 306  Q
    ||||||||| ||||||||||||||||||||||||    
T  27412884 tcataagttgttttcataagctctctcaaatagt 27412851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 29263016 - 29262942
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 225  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  29263016 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 29262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 30191150 - 30191101
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| ||||||    
T  30191150 gaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 6918956 - 6918988
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttt 180  Q
    ||||||||||||| |||||||||||||||||||    
T  6918956 tatcatataagtgcttatgtataagctattttt 6918988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 10923674 - 10923730
Alignment:
Q  283 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 339  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
T  10923674 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 10923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 11376765 - 11376825
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    ||||||||| ||| |||||||||||| |||| |||||||||| ||||| | |||| |||||    
T  11376765 aacatgtcacaagctattttcataagttctcccaaatagtctcacaagaacttatatcagt 11376825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 11952510 - 11952478
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttt 180  Q
    |||||||||||||||||||||||||| ||||||    
T  11952510 tatcatataagtgtttatgtataagccattttt 11952478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 31915297 - 31915245
Alignment:
Q  271 tgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 323  Q
    ||||||||||| |||  ||||||| ||||||| ||||| ||||||||||||||    
T  31915297 tgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgt 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 40357824 - 40357903
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgttt 227  Q
    |||||||||||| ||||||||||||||  ||  |||||| ||| |||||||||||| ||| |||||||||| | |||||||    
T  40357824 tatcatataagtatttatgtataagct-cttgatataacaaaagataaaataaagtaaaattattttcataaatgctgttt 40357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 40428471 - 40428555
Alignment:
Q  140 taagcgcgtatcatataagtgtttatgtataagctattttttataac--aaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||| ||| ||||||||| ||||| |||||| ||||| ||||||  ||| |||||||||||||||| ||||||||||||||||    
T  40428471 taagcgcctattatataagtgattatggataagc-attttctataacgaaaaaataaaataaagttaaattattttcatataagct 40428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 49060465 - 49060540
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||| ||||||||||||||| ||| |||||| ||| |||||||||||| ||| |||||| |||||||||    
T  49060465 tatcatataagtatttatgtataagcta-tttctataacaaaaaataaaataaagtcaaattatttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 3500974 - 3500913
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtctta--caagtatttatgtcagt 327  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||  ||||| |||||||||||    
T  3500974 acatgtcataagttatttccataagctctcacaaatagacttacgcaagtttttatgtcagt 3500913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 22387904 - 22387838
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 333  Q
    |||||| |||||||| ||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
T  22387904 aacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaata 304  Q
    |||||||||||||||||||||||||||||||||||    
T  31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaata 304  Q
    |||||||||||||||||||||||||||||||||||    
T  31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 45593864 - 45593791
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 221  Q
    |||||||||| || ||||||||||||||||| |  ||||||| ||||||||||||| ||||| ||||||||||||    
T  45593864 tatcatataaatgcttatgtataagctatttctg-taacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 26935723 - 26935620
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatat 218  Q
    ||||||||| | | |||||||||| |  ||||||||||||| || ||| |||||||| ||||||||||||  ||||||||| |||||| | |||||||||    
T  26935723 ttaattaagcgcttataccataagagattatcatataagtgcttttgtgtaagctat-ttttataacaaatgataaaataaggttaaattgttttcatat 26935625  T
Q  219 aagct 223  Q
     ||||    
T  26935624 gagct 26935620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 27389298 - 27389338
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  27389298 cataagtgcttatcatataagtgtttatgtataagctattt 27389338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 36370595 - 36370669
Alignment:
Q  148 tatcatataagtgttt-atgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||| |||||| |||||||||||||||| |||||| || ||||||| |||||||||| |||||| |||||||    
T  36370595 tatcatatatgtgttttatgtataagctattttctataac-aagataaaat-aagttaaactgttttcacataagct 36370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 44151468 - 44151424
Alignment:
Q  283 ttttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  44151468 ttttcataagctctctcaaataatctcacaagtacttatgtcagt 44151424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 45078218 - 45078265
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaa 196  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  45078218 tatcatataagtgcttatgtataagcta-tttttataacaaaaataaaa 45078265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 47004012 - 47004082
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 218  Q
    |||||||||||||||||| | ||||||| ||| |||||||| | |||||||||||| |||||||||| ||||    
T  47004012 tatcatataagtgtttatatgtaagcta-tttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 28844383 - 28844441
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||||||||||| ||| ||||||||| |||  |||||||| ||||||||||| |||||    
T  28844383 ttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataagatattt 28844441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 44808221 - 44808266
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaa 313  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  44808221 acatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 1431463 - 1431423
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  1431463 cataagtgcttatcatataagtgtttatgtataagttattt 1431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 8094368 - 8094416
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    ||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagt 8094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 22759111 - 22759186
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||| |||||||| ||||||| ||| |||||| ||| |||||||||||  ||| | ||||||||||||||    
T  22759111 tatcatataagcgtttatgtttaagcta-tttgtataacaaaagataaaataaaggaaaattgttttcatataagct 22759186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 27481435 - 27481364
Alignment:
Q  152 atataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||||||||||| ||| |||||||||  ||||||  |||| ||||| ||| ||||||||||    
T  27481435 atataagtgtttatgtataagcta-tttctataacaaaggataaaacgaagtcaaactgtttccatataagct 27481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 27518005 - 27517969
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagct 174  Q
    |||||| || |||||||||||||||||||||||||||    
T  27518005 cataagtgcttatcatataagtgtttatgtataagct 27517969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 30496622 - 30496701
Alignment:
Q  141 aagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 220  Q
    |||||| ||||| |||||||||||||||||| ||| ||| |||||| ||| |||||||||||| ||| | ||||| |||||    
T  30496622 aagcgcatatcacataagtgtttatgtataaacta-tttctataacaaaatataaaataaagtcaaattgttttcgtataa 30496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 31341109 - 31341192
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 221  Q
    ||||||||| |||||| ||| || |||||||||||||| ||| |||||| ||| |||||||||||| |||||  ||| |||||||    
T  31341109 cataagcgcttatcatctaaatgcttatgtataagcta-tttgtataacaaaagataaaataaagtcaaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 35536026 - 35536105
Alignment:
Q  142 agcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 221  Q
    ||||| ||||||||||  | |||||||||||||| ||| ||||||| || |||||||||||| ||| | ||||||||||||    
T  35536026 agcgcttatcatataaaggcttatgtataagcta-tttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 36537969 - 36538025
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    |||||||||||||||| ||| |||||| ||||||||| | ||| |||||| ||||||    
T  36537969 gaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 39551693 - 39551618
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||| |||| |||||||||| ||| |||||| ||| ||| | |||||| ||||| ||||||||||||||    
T  39551693 tatcatataagtatttaagtataagcta-tttctataacaaaagatatactaaagtaaaactgttttcatataagct 39551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 40689088 - 40689056
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||| ||||||||||||||||    
T  40689088 ataaaataaagttaaattattttcatataagct 40689056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 2034575 - 2034494
Alignment:
Q  156 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaa 238  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||| |||  |||||||||    
T  2034575 aagtgcttatgtataagctgttttt-acaacaaagataaaataaagtcaaactactttcatataagcttttttcataagctaa 2034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 7351763 - 7351678
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||||| | |||||||||| || |||||||||| |||||| | |||| |||| |||||||||||||||||| ||||||||||||||    
T  7351763 cataagctcttatcatataaatgcttatgtataaactatttat-ataataaactataaaataaagttaaactgttttcatataagct 7351678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 32513752 - 32513825
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctg 224  Q
    |||||| |||||||||| ||||| ||||| | |||||||| |||||||||||| ||||||||| |||||||||||    
T  32513752 tcatattagtgtttatgcataagttatttct-ataacaaaaataaaataaagtcaaactatttccatataagctg 32513825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 10452505 - 10452430
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||||| |||| ||||||||||||||||| | ||||||||  |||||||||| | ||||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttct-ataacaaaatataaaataaaatcaaactattttcatataagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 1669805 - 1669758
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1669805 acatgtcataagttgttttcataagctctcccaattagtcttacaagt 1669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 3217344 - 3217262
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 221  Q
    |||||||  ||||||||||||| |||||||||||||||||||  ||| | || |||||||||||| ||| ||||||||||||||    
T  3217344 ataagcgattatcatataagtgcttatgtataagctatttttg-taagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 20368189 - 20368142
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaa 313  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  20368189 gaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 2460158 - 2460104
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  2460158 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 2460104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 32975875 - 32975933
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||||||| ||| ||| ||||||||| | ||||||||||||||||||||||| |||||    
T  32975875 ttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttattt 32975933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 1402964 - 1402996
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||||||||||||||||||||    
T  1402964 ataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 10032496 - 10032571
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 223  Q
    |||||||||| ||||||||||||||||| |||||||||||| |  | ||||||||  |||||| |||||||||||||    
T  10032496 tatcatataaatgtttatgtataagcta-tttttataacaataggtgaaataaaggcaaactaatttcatataagct 10032571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 27693448 - 27693392
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    |||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||    
T  27693448 gaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 9833270 - 9833168
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 218  Q
    ||||||||||||| ||| ||||||||  ||||||||||||| || | |||||| || ||| ||| |||| | |||||||||||| ||||| ||||| |||    
T  9833270 ttaattaagtgtttataacataagcgtttatcatataagtgcttctctataagata-tttctattacaataaataaaataaagtcaaactgttttcttat 9833172  T
Q  219 aagc 222  Q
    ||||    
T  9833171 aagc 9833168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 24332858 - 24332924
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaa 205  Q
    ||||||| | |||| |||||||| ||||||||||||||||| || ||| ||| |||||||||||||||    
T  24332858 cataagcacttatcctataagtgattatgtataagctatttctt-taaaaaagataaaataaagttaa 24332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 32577993 - 32577934
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    |||||||||||||| |||||||||||||||||||| | | |  |||||||||||| ||||    
T  32577993 acatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagt 32577934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 22742281 - 22742366
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 223  Q
    ||||||||| |||| |||||||  |||| ||||||||| ||| |||||||||  |||||||||||| ||| | ||||||||||||||    
T  22742281 cataagcgcttatcgtataagttcttatctataagcta-tttgtataacaaaggataaaataaagtcaaattgttttcatataagct 22742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 30817709 - 30817671
Alignment:
Q  151 catataagtgtttatgtataagctattttttataacaaa 189  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  30817709 catataagtgcttatgtatatgctattttttataacaaa 30817671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 30863309 - 30863363
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    |||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||||    
T  30863309 acatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 30865547 - 30865601
Alignment:
Q  269 catgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 323  Q
    ||||||||||||||||| |||||||||||| |||  |||| |||||| |||||||    
T  30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgt 30865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 33068734 - 33068676
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 178  Q
    ||||||||||||| ||| ||||||||| ||||| |||| || ||||||||||| |||||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttattt 33068676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 27693581 - 27693507
Alignment:
Q  150 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 225  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  27693581 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 27693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 27857423 - 27857480
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 327  Q
    |||||||||||| ||||||||||||||| |||| ||| | |||||| | |||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagt 27857480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 32917260 - 32917313
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttat 321  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||    
T  32917260 acatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 33911422 - 33911366
Alignment:
Q  152 atataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 208  Q
    |||||||||||||||||||| ||| |||||||||| ||| || |||||||||||||||    
T  33911422 atataagtgtttatgtataatcta-tttttataacaaaagatcaaataaagttaaact 33911366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 2027523 - 2027479
Alignment:
Q  177 tttttataacaaac-ataaaataaagttaaactattttcatataa 220  Q
    |||||||||||||  |||||||||||| |||||||||||||||||    
T  2027523 tttttataacaaaagataaaataaagtcaaactattttcatataa 2027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 8010282 - 8010349
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 216  Q
    ||||||||||||| ||| |||||||||| ||| ||||||||  |||||||||||| || ||| ||||||    
T  8010282 tatcatataagtgcttaggtataagcta-tttctataacaacaataaaataaagtcaatctactttcat 8010349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 28660877 - 28660833
Alignment:
Q  177 tttttataacaa-acataaaataaagttaaactattttcatataa 220  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  28660877 tttttataacaatagataaaataaagttaaattattttcatataa 28660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 31668430 - 31668474
Alignment:
Q  278 agttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||    
T  31668430 agttgttttcataagctctctctaatagtctcacaagtgtttatg 31668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 2175857 - 2175809
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  2175857 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 2175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 25459770 - 25459696
Alignment:
Q  146 cgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 221  Q
    |||||||| |||||| || ||||||| ||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  25459770 cgtatcatgtaagtgcttttgtataaactattgtt-ataacaaagataatataaagataaactattttcatataag 25459696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 16790501 - 16790432
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcata 217  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| | ||| ||||||||||    
T  16790501 tatcatataagtgcttatgtataagctat-ttttataacaacagataaaataaaatcaaattattttcata 16790432  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 25182992 - 25182947
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
T  25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 25183134 - 25183058
Alignment:
Q  148 tatcatataagtgttta-tgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||  || |||||||||||| |||||||||||| ||||    
T  25183134 tatcatataagtgtttaatgtataaactattttt-ataacaaaagattaaataaagttaagctattttcatatgagct 25183058  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 28843012 - 28842971
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctatttt 179  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  28843012 cataagcgcttatcatataagtgcttatgtataagctatttt 28842971  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 38462206 - 38462277
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatata 219  Q
    |||||||||||||||||| ||||||||| ||| |||| | ||| |||||||||||| ||||| ||||||||||    
T  38462206 tatcatataagtgtttatttataagcta-tttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 49772813 - 49772781
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttt 180  Q
    |||||||||||||||||||||||||||||||||    
T  49772813 tatcatataagtgtttatgtataagctattttt 49772781  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 1810040 - 1810087
Alignment:
Q  268 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagt 1810087  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 22232742 - 22232824
Alignment:
Q  139 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 221  Q
    |||||| | |||||||||| || | ||||||||||||||| | ||||||||  |||||||||||| ||||| ||||||||||||    
T  22232742 ataagctcttatcatataaatgctcatgtataagctatttat-ataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 28779274 - 28779356
Alignment:
Q  141 aagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 223  Q
    |||||| |||||||||| || || |||||||||| ||||| ||||||  | || ||||||||| ||||||||||||||||||||    
T  28779274 aagcgcttatcatataattgcttttgtataagctgttttt-ataacatcagatgaaataaagtcaaactattttcatataagct 28779356  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 32703063 - 32703138
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 223  Q
    |||||||||| |||||||||||||||||||| |  ||  ||| |||||||||| | ||| | ||||||||||||||    
T  32703063 tatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 40880954 - 40880915
Alignment:
Q  269 catgtcataagttattttcataagctctctcaaatagtct 308  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  40880954 catgtcataagttgttttcataagctctctcaaacagtct 40880915  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 47584523 - 47584570
Alignment:
Q  278 agttattttcataagctctctcaaatagtcttacaagtatttatgtca 325  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  47584523 agttcttttcataagctctctcaaatagtctcacaagtgcttatgtca 47584570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 50015948 - 50016003
Alignment:
Q  267 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||| ||||||    
T  50015948 aacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 12985497 - 12985399
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatata---agtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 216  Q
    ||||||||||||| || | |||||||| |||||| ||   |||||||||||||||| | ||| | |||||||| ||||||||||| |||||| |||||||    
T  12985497 ttaattaagtgtttattctataagcgcttatcatgtagtaagtgtttatgtataagttgtttct-ataacaaa-ataaaataaagataaactgttttcat 12985400  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 21574551 - 21574593
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtct 308  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
T  21574551 gaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 47132063 - 47132101
Alignment:
Q  274 cataagttattttcataagctctctcaaatagtcttaca 312  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  47132063 cataagttgttttcataagttctctcaaatagtcttaca 47132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 50004713 - 50004787
Alignment:
Q  266 gaacatgtcataagttattttcataa-gctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 339  Q
    |||||||||||||||| ||| ||||| || |||||||| |||||||||| |  |||||||||| |||||| ||||    
T  50004713 gaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 1395611 - 1395671
Alignment:
Q  163 tatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  1395611 tatgtataagctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 14548726 - 14548681
Alignment:
Q  270 atgtcataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaagt 14548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 33965665 - 33965564
Alignment:
Q  120 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatat 218  Q
    ||||||||| | | ||| ||||| | |||||  |||| |||||| |||| ||| ||||||||||||| |||  ||||||||||| ||||| |||||||||    
T  33965665 ttaattaagcgcttatagcataaacacgtattgtataggtgtttttgtacaagttattttttataacaaaaggtaaaataaagtcaaactgttttcatat 33965566  T
Q  219 aa 220  Q
    ||    
T  33965565 aa 33965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 2304280 - 2304224
Alignment:
Q  266 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 322  Q
    ||||||||||||||||  ||||||||  ||||||||||||| | |||||| ||||||    
T  2304280 gaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatg 2304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 9279481 - 9279417
Alignment:
Q  138 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 202  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||  || ||| ||| ||||||||    
T  9279481 cataagcgcttatcatataagcatttatgtataagttattttttcgaaaaaagatacaataaagt 9279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 37689509 - 37689454
Alignment:
Q  168 ataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||    
T  37689509 ataagctattttt-ataacaaaagataaagtaaagttaaattattttcatataagct 37689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 41028996 - 41028921
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| | |||||||||| || || |||||| |||||||    
T  41028996 tatcatataagtgcttatgtataagcta-tttctataacaaaagaaaaaataaagtcaatctgttttcaaataagct 41028921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 42809242 - 42809305
Alignment:
Q  164 atgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 227  Q
    ||||||||||||||| | ||||||||  |||||||| ||||||| | ||||||||||||||||||    
T  42809242 atgtataagctatttct-ataacaaaagataaaatatagttaaattgttttcatataagctgttt 42809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 43116573 - 43116498
Alignment:
Q  148 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 223  Q
    ||||||| |||||||||||| ||||||| ||| |||||| ||| ||||||| || | |||| |||||||||||||||    
T  43116573 tatcatacaagtgtttatgtgtaagcta-tttctataacaaaagataaaatcaaatcaaacaattttcatataagct 43116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 44284217 - 44284134
Alignment:
Q  134 ataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 217  Q
    ||||||||||||  ||||||||||||  | |||||||||||| ||| |||||| ||| |||||| ||||| ||||| ||||||||    
T  44284217 ataccataagcgattatcatataagtactaatgtataagcta-tttctataacaaaaaataaaacaaagtcaaactgttttcata 44284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 50211805 - 50211845
Alignment:
Q  275 ataagttattttcataagctctctcaaatagtcttacaagt 315  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagt 50211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 6600 - 6568
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||| ||||||||||||||||||||    
T  6600 ataaaataaagtcaaactattttcatataagct 6568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 13620 - 13588
Alignment:
Q  191 ataaaataaagttaaactattttcatataagct 223  Q
    |||||||||||| ||||||||||||||||||||    
T  13620 ataaaataaagtcaaactattttcatataagct 13588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 21409 - 21334
Alignment:
Q  162 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 237  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||| | ||||| ||||||||||||  ||||||||    
T  21409 ttatgtataagctattttt-ataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagcta 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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