View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_17 (Length: 354)
Name: NF1729_high_17
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 33714207 - 33713864
Alignment:
| Q |
1 |
atcgaacacctcacatacaagtctacaccagtagtaatttgagaagacgacattatcgaatgtaatcagaagtgtggcatgtcacaaaatattctgataa |
100 |
Q |
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| T |
33714207 |
atcgaacacctcacatacaagtctacaccagtagtaatttgagaagatgacattatcgaatgtaatcagaagtgtggcatgtcacaaactattctgataa |
33714108 |
T |
|
| Q |
101 |
gttcatattactgcattatccacttaaaaagttataaaattttgttatcaatattcaaataacaattctaaataagaagaaga------agaacaaacca |
194 |
Q |
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| T |
33714107 |
gttcatattactgcattatccacttaaaaagttatcaaactttgttatcaatatacaaataacaattctaaataagaagaagaagaagaagaacaaacca |
33714008 |
T |
|
| Q |
195 |
aggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgacgccatttcaaaatgaagcttattaacaatgcgttctgaatcagacattaca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33714007 |
aggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgaggccatttcaaaatgaagcttattaacaatgcgttctgaatcagacattaca |
33713908 |
T |
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| Q |
295 |
gcttcagtgtacttctcttcttgctccatgtaaacgtccatgtg |
338 |
Q |
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| T |
33713907 |
gcttcagtgtacttctcttcttgctccatgtaaacgtccatgtg |
33713864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 7512206 - 7512251
Alignment:
| Q |
31 |
gtagtaatttgagaagacgacattatcgaatgtaatcagaagtgtg |
76 |
Q |
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| T |
7512206 |
gtagtaatttgagaaaatgacattattgaatgtaatcagatgtgtg |
7512251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 7512449 - 7512489
Alignment:
| Q |
30 |
agtagtaatttgagaagacgacattatcgaatgtaatcaga |
70 |
Q |
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| T |
7512449 |
agtagtaatttgagaaaatgacattattgaatgtaatcaga |
7512489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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