View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_high_2 (Length: 528)

Name: NF1729_high_2
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_high_2
NF1729_high_2
[»] chr4 (20 HSPs)
chr4 (1-513)||(5162503-5163015)
chr4 (3-476)||(5184372-5184838)
chr4 (103-200)||(55264632-55264729)
chr4 (36-174)||(53924395-53924530)
chr4 (105-200)||(55264380-55264474)
chr4 (109-166)||(44137405-44137462)
chr4 (42-162)||(54458706-54458826)
chr4 (105-200)||(13302119-13302213)
chr4 (35-150)||(49448188-49448303)
chr4 (105-200)||(55284053-55284148)
chr4 (103-166)||(33614384-33614447)
chr4 (35-86)||(45921830-45921881)
chr4 (69-183)||(54090992-54091106)
chr4 (103-164)||(13119381-13119442)
chr4 (103-182)||(13119191-13119270)
chr4 (103-182)||(39051328-39051406)
chr4 (103-162)||(40942675-40942734)
chr4 (105-163)||(7402978-7403036)
chr4 (105-182)||(13432756-13432832)
chr4 (120-200)||(3465369-3465449)
[»] chr2 (14 HSPs)
chr2 (36-183)||(6511016-6511163)
chr2 (103-178)||(22191386-22191461)
chr2 (103-184)||(17658774-17658855)
chr2 (124-184)||(17672942-17673002)
chr2 (116-179)||(22191527-22191590)
chr2 (35-142)||(32502875-32502982)
chr2 (109-166)||(32013984-32014041)
chr2 (124-184)||(17627870-17627930)
chr2 (103-166)||(33940037-33940100)
chr2 (103-150)||(39760175-39760222)
chr2 (124-194)||(17184764-17184834)
chr2 (131-200)||(35736709-35736778)
chr2 (126-174)||(2451166-2451214)
chr2 (42-174)||(32502985-32503117)
[»] chr5 (13 HSPs)
chr5 (105-182)||(36184738-36184815)
chr5 (103-181)||(31065847-31065925)
chr5 (105-184)||(11275790-11275869)
chr5 (103-182)||(33391514-33391593)
chr5 (116-197)||(20399019-20399100)
chr5 (103-181)||(31050968-31051046)
chr5 (129-174)||(987328-987373)
chr5 (105-166)||(8840022-8840083)
chr5 (105-194)||(31046143-31046231)
chr5 (103-166)||(8285238-8285301)
chr5 (131-174)||(36184524-36184567)
chr5 (120-165)||(27354306-27354351)
chr5 (109-182)||(31066088-31066161)
[»] chr6 (18 HSPs)
chr6 (119-182)||(9530547-9530610)
chr6 (100-182)||(19121854-19121936)
chr6 (103-182)||(21969143-21969222)
chr6 (41-150)||(3889971-3890080)
chr6 (103-180)||(19121985-19122062)
chr6 (113-182)||(21394254-21394323)
chr6 (128-200)||(3889883-3889955)
chr6 (130-182)||(30747944-30747996)
chr6 (103-182)||(3960852-3960931)
chr6 (105-180)||(8446945-8447020)
chr6 (105-180)||(8455749-8455824)
chr6 (107-165)||(17333311-17333368)
chr6 (103-149)||(17437558-17437604)
chr6 (35-85)||(17437695-17437745)
chr6 (44-86)||(23765853-23765895)
chr6 (135-180)||(21969306-21969351)
chr6 (125-162)||(24794190-24794227)
chr6 (53-145)||(15965646-15965738)
[»] chr3 (18 HSPs)
chr3 (103-182)||(55447182-55447261)
chr3 (103-182)||(39840659-39840738)
chr3 (103-200)||(38181332-38181429)
chr3 (53-183)||(33075219-33075349)
chr3 (126-183)||(27812204-27812261)
chr3 (105-182)||(20124246-20124322)
chr3 (35-166)||(29504832-29504963)
chr3 (103-174)||(45965804-45965875)
chr3 (103-166)||(46164085-46164148)
chr3 (103-181)||(40472831-40472909)
chr3 (119-181)||(40860967-40861029)
chr3 (109-166)||(31300371-31300428)
chr3 (103-180)||(39840892-39840969)
chr3 (105-182)||(42045771-42045848)
chr3 (110-166)||(1431476-1431532)
chr3 (126-166)||(3910247-3910287)
chr3 (124-164)||(48338573-48338613)
chr3 (126-182)||(49782221-49782277)
[»] chr1 (21 HSPs)
chr1 (109-182)||(28504711-28504784)
chr1 (106-200)||(46410826-46410920)
chr1 (103-183)||(10595501-10595581)
chr1 (35-182)||(6219625-6219772)
chr1 (103-174)||(7790411-7790481)
chr1 (131-182)||(8792967-8793018)
chr1 (125-200)||(10377568-10377643)
chr1 (119-200)||(6219766-6219847)
chr1 (126-179)||(27293283-27293336)
chr1 (103-180)||(27562671-27562748)
chr1 (108-180)||(38576576-38576648)
chr1 (103-197)||(23399510-23399607)
chr1 (116-166)||(15395209-15395259)
chr1 (103-180)||(38783894-38783971)
chr1 (103-151)||(34835619-34835667)
chr1 (131-197)||(40650039-40650104)
chr1 (103-164)||(4066923-4066984)
chr1 (117-194)||(27293426-27293503)
chr1 (125-162)||(34835740-34835777)
chr1 (42-86)||(27293350-27293394)
chr1 (105-145)||(46410682-46410722)
[»] scaffold0022 (1 HSPs)
scaffold0022 (109-166)||(122547-122604)
[»] chr8 (11 HSPs)
chr8 (103-200)||(10028633-10028730)
chr8 (103-184)||(10028741-10028822)
chr8 (36-180)||(33229497-33229635)
chr8 (105-182)||(21136587-21136664)
chr8 (105-182)||(10028876-10028953)
chr8 (104-185)||(23961644-23961725)
chr8 (126-178)||(41687849-41687901)
chr8 (124-183)||(5840352-5840411)
chr8 (116-166)||(23768775-23768825)
chr8 (42-83)||(10028813-10028854)
chr8 (35-83)||(5846951-5846999)
[»] chr7 (14 HSPs)
chr7 (126-180)||(36478557-36478611)
chr7 (105-164)||(21248998-21249057)
chr7 (103-174)||(41008922-41008993)
chr7 (103-182)||(42709917-42709996)
chr7 (36-180)||(10524976-10525114)
chr7 (35-180)||(30935271-30935416)
chr7 (103-163)||(6026-6086)
chr7 (110-197)||(3248445-3248532)
chr7 (103-166)||(3248336-3248399)
chr7 (105-172)||(26752017-26752084)
chr7 (55-145)||(12427916-12428006)
chr7 (125-182)||(12427833-12427890)
chr7 (103-180)||(16830294-16830371)
chr7 (110-166)||(32047272-32047328)
[»] scaffold0528 (1 HSPs)
scaffold0528 (103-181)||(1895-1973)
[»] scaffold0154 (1 HSPs)
scaffold0154 (103-166)||(6220-6283)
[»] scaffold0137 (1 HSPs)
scaffold0137 (103-166)||(17116-17179)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 5163015 - 5162503
Alignment:
Q  1 catagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5163015 catagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggt 5162916  T
Q  101 ttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5162915 ttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgacccgatttggtggtt 5162816  T
Q  201 gaagaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162815 gaagaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcga 5162716  T
Q  301 cagagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcatcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162715 cagagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcatcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctg 5162616  T
Q  401 cagggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggatatgatatgacgacaaagatggtaa 500  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162615 ccgggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggatatgatatgacgacaaagatggtaa 5162516  T
Q  501 cagaagttgtatg 513  Q
    |||||||||||||    
T  5162515 cagaagttgtatg 5162503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 476
Target Start/End: Complemental strand, 5184838 - 5184372
Alignment:
Q  3 tagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggttt 102  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||  |||| ||||||||||||||||||||||||| | || |||||     
T  5184838 tagggtctcataatgaattacttacaaaagcacttagtcaaaagtttgtcaattagaaccttttctttatgtttttgtcacatgtcgaaggatctggttc 5184739  T
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggttga 202  Q
    |||||||||||| ||| | |  || ||||||||||||||||||||||||| || |||||||||  || ||||    |||||| |||||||||||| ||||    
T  5184738 agaaacttttgataaaaaaaatgaataatttgaaatattaatagagttagtgattaatttgag--tggctta----gacatggaccgatttggtgcttga 5184645  T
Q  203 agaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcgaca 302  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184644 agaatta-ttattgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcgaca 5184546  T
Q  303 gagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcatcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctgca 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5184545 gagcatgctctcgagtaaaaaacagtttttgctcgttttcttttcgtcttttcaataatactctagcatagggcctgtcacagaatcaatggctgctgcc 5184446  T
Q  403 gggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184445 gggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggat 5184372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 55264632 - 55264729
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||| | |||||||||||||||| | |||| |||||||||| ||| | |||||||||    
T  55264632 agaaacttttgacaaagacacagactcttttgaaatattaatagattcagagactaatttgagagtcacttgtaaagacatggaccaaattggtggtt 55264729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 53924530 - 53924395
Alignment:
Q  36 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 135  Q
    ||||| |||||||| | |||||| || ||||||||||||||||||||||||  |||||| ||  || |||||||||||| |||||||  ||||| ||||     
T  53924530 tttgtcaaaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaagacaatgactagtttg- 53924432  T
Q  136 aatattaatagagttagagactaatttgagattgactta 174  Q
      |||||||||||| | | |||||||||||  |||||||    
T  53924431 --tattaatagagtcacatactaatttgagggtgactta 53924395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 55264474 - 55264380
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||| |||||||  ||||| ||||||||||||||||||| || |||||| |||| | ||||||||||||||| | ||| |||||||||||    
T  55264474 aaacttttgacaaagacaatgactattttgaaatattaatagagtcagtgactaaattgaaagtgacttataaagacacg-accaatttggtggtt 55264380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 44137462 - 44137405
Alignment:
Q  109 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  44137462 ttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgaga 44137405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 54458706 - 54458826
Alignment:
Q  42 aaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatatt 141  Q
    |||||||| | |||||| |||||||||| |||||||||||||||  ||||| |  |  |  ||| |||||||| ||||||||| | || |||||||||||    
T  54458706 aaaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagggacctaatcgagacacttttgacaaagacagatattagtttgaaatatt 54458805  T
Q  142 aatagagttagagactaattt 162  Q
    ||||||||| |||| ||||||    
T  54458806 aatagagtttgagattaattt 54458826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 13302213 - 13302119
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||| |||||||||||||| |||||||| ||||||||   || ||||||||||||| ||||||| ||||||| | | | |||||||||||    
T  13302213 aaacttttgaaaaagacagagacta-tttgaaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtt 13302119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 49448188 - 49448303
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 134  Q
    |||||| |||||||| | |||||| ||  ||||||||||||||||||| ||| ||||  || |  || | |||||||||| ||||||| |||||| ||||    
T  49448188 ctttgtcaaaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaagacaaagactagtttg 49448287  T
Q  135 aaatattaatagagtt 150  Q
    ||||||||||| ||||    
T  49448288 aaatattaatatagtt 49448303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 55284053 - 55284148
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||  ||||||||| ||||  |||||||||||||||| |||||||||||||| | | ||||||||||| ||||  ||  |||||||||||    
T  55284053 aaacttttggcaaagacagaaactagattgaaatattaatagaattagagactaatttaataatgacttataaaaacatagactaatttggtggtt 55284148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 33614384 - 33614447
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||||  |||||||||||||| ||||||||||||||| ||| |  |||||||||||||    
T  33614384 agaaacttttgtcaaagacagagactagtttgaaatattaataaagtcatggactaatttgaga 33614447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 45921881 - 45921830
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatg 86  Q
    |||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  45921881 ctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgtcacatg 45921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 54090992 - 54091106
Alignment:
Q  69 ttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagatt 168  Q
    |||||||||||||||||| ||||| |  |  || ||||||||| || ||||||| | |||| ||| |||||||||| |||| |  ||||||||||||| |    
T  54090992 ttatgtttttgtcacatgacgagggacctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaat 54091091  T
Q  169 gacttataaagacat 183  Q
    |||||| || |||||    
T  54091092 gacttacaacgacat 54091106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 13119381 - 13119442
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttga 164  Q
    |||||||||| | |||||||| ||||| ||||||||||||||||||| | | ||||||||||    
T  13119381 agaaacttttaacaaagacagggactattttgaaatattaatagagtcataaactaatttga 13119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 13119270 - 13119191
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| |||||||| ||||| |||||||||||||  | || |   |||||||||||||| ||||| |||||||    
T  13119270 agaaacttttgacaaagacagcgactattttgaaatattaaatgcgtgaagaactaatttgagattcacttacaaagaca 13119191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 39051328 - 39051406
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| |||||||| ||||| ||| ||||||||||||||| | | |||||||| | | ||| |||||||||||    
T  39051328 agaaacttttgacaaagacagtgactattttaaaatattaatagagtcata-actaatttaaaagtgatttataaagaca 39051406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 40942675 - 40942734
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaattt 162  Q
    |||||||||||| ||| ||| |||||||||| ||||||||||| ||| | ||||||||||    
T  40942675 agaaacttttgacaaaaacaaagactaatttaaaatattaatatagtcatagactaattt 40942734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 7403036 - 7402978
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttg 163  Q
    |||| ||||| ||||| |||||||||||| |||||||||||||||  || |||||||||    
T  7403036 aaacatttgataaagaaagagactaatttaaaatattaatagagtcggaaactaatttg 7402978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 13432756 - 13432832
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||| |||| ||||||||| ||| |||| ||||||||   | |||||||||||||| ||||||| |||||||    
T  13432756 aaacttttgacaaagtcagagacta-tttaaaatgttaatagaagcatagactaatttgagaatgacttacaaagaca 13432832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 3465449 - 3465369
Alignment:
Q  120 acagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||||||| ||||||||||| ||| | | |||||||| ||| ||| ||| ||||| ||||||  ||||| |||||    
T  3465449 acagagactaatttaaaatattaataaagtcatatactaatttaagaatgaattacaaagatatgaacgaatttgatggtt 3465369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 36 - 183
Target Start/End: Complemental strand, 6511163 - 6511016
Alignment:
Q  36 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 135  Q
    ||||| |||||||| | |||| ||||| |||||||||||||||||||||||  || |||| |  || ||||| |||||| |||||  ||||||| |||||    
T  6511163 tttgtcaaaagtttctcaatttggtccatgtctttatgtttttgtcacatgatgaagaatctatttgagaaatttttgacaaagatggagactattttga 6511064  T
Q  136 aatattaatagagttagagactaatttgagattgacttataaagacat 183  Q
    |||||||| ||| | | |||||||||||| | ||||||||||||||||    
T  6511063 aatattaacagaatcatagactaatttgaaaatgacttataaagacat 6511016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 22191461 - 22191386
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaa 178  Q
    |||||||||||| ||||||| |||||| ||| ||||||||||  ||||| |||||||||||| | |||||||||||    
T  22191461 agaaacttttgacaaagacaaagactattttaaaatattaattaagttatagactaatttgaaaatgacttataaa 22191386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 17658855 - 17658774
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 184  Q
    ||||| |||||| |||||||  ||||| |||||||||||||||||||| | ||||||||||| | ||||||| ||| |||||    
T  17658855 agaaatttttgacaaagacaatgactattttgaaatattaatagagttggggactaatttgatagtgacttaaaaatacatg 17658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 17673002 - 17672942
Alignment:
Q  124 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 184  Q
    |||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||| |||||    
T  17673002 agactattttgaaatattaatagaattggagactaatttgagagtgacttaaaaatacatg 17672942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 22191527 - 22191590
Alignment:
Q  116 aaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaag 179  Q
    ||||||| |||||| ||| ||||||||||||||| || ||||||||||||| ||||||| ||||    
T  22191527 aaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaag 22191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 32502875 - 32502982
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 134  Q
    |||||||||| |||| | |||||| || |||||| ||||||||||||||||| ||||  || |  || | ||| |||||| ||||||| |||||| ||||    
T  32502875 ctttgttaaatgtttctcaattagatcattgtctctatgtttttgtcacatgacgagacatttaattgaaaaaattttgacaaagacaaagactattttg 32502974  T
Q  135 aaatatta 142  Q
    ||||||||    
T  32502975 aaatatta 32502982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 32013984 - 32014041
Alignment:
Q  109 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| |||||||| ||||| |||||||||| |||||||| | ||||||||||||||    
T  32013984 ttttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgaga 32014041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 17627930 - 17627870
Alignment:
Q  124 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 184  Q
    |||||| |||||||||||||||||||| | ||||||||||| | ||||||| ||| |||||    
T  17627930 agactattttgaaatattaatagagttggtgactaatttgaaagtgacttaaaaatacatg 17627870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 33940037 - 33940100
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||||| ||| |||| ||||| ||||||||||||||| ||| |  |||||||||||||    
T  33940037 agaaacttttgaaaaaaacagtgactattttgaaatattaataaagtcaacgactaatttgaga 33940100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 39760222 - 39760175
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagtt 150  Q
    |||||||||||| ||| ||| |||||| ||||||||||||||||||||    
T  39760222 agaaacttttgataaaaacatagactattttgaaatattaatagagtt 39760175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 17184834 - 17184764
Alignment:
Q  124 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttg 194  Q
    |||||| ||| ||||||||||||||| |||||||| ||||| | |  |||| ||||||||||||| |||||    
T  17184834 agactagtttaaaatattaatagagtcagagactagtttgataatagcttacaaagacatgaaccaatttg 17184764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 35736778 - 35736709
Alignment:
Q  131 tttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    ||||| |||||| |||||| || ||||| ||||||| ||| ||| ||||||||| ||| |||||||||||    
T  35736778 tttgagatattagtagagtcagtgactagtttgagagtgaattacaaagacatggaccaatttggtggtt 35736709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 2451166 - 2451214
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgagattgactta 174  Q
    ||||||||  ||| |||||||||||| |||||||||||||| |||||||    
T  2451166 actaatttataatgttaatagagttaaagactaatttgagaatgactta 2451214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 32502985 - 32503117
Alignment:
Q  42 aaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatatt 141  Q
    |||||||| | |||||| ||  ||||| ||||||||| ||| ||| ||||| |  |  || |||| ||||||| |||||||  ||||| ||| ||||||     
T  32502985 aaaagtttatcaattagatctctgtctctatgtttttatcatatgacgagggacttaattgagaatcttttgacaaagacaatgactattttaaaatatc 32503084  T
Q  142 aatagagttagagactaatttgagattgactta 174  Q
    ||||||||  ||||||||||||| | |||||||    
T  32503085 aatagagtgtgagactaatttgataatgactta 32503117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 36184738 - 36184815
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||| |||||||    
T  36184738 aaacttttgacaaagacagtgactattttgaaatactaatagagttagagactaatttgagagtgatttacaaagaca 36184815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 31065925 - 31065847
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 181  Q
    |||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||||    
T  31065925 agaaacttttgacaaagacaatgactattttgaaatattaatagagttagagactaatcagtgattcacttataaagac 31065847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 11275790 - 11275869
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 184  Q
    |||||||||| ||| | ||| |||||||| ||||||||||| ||| |||||||||||||||| ||| ||| |||||||||    
T  11275790 aaacttttgacaaatatagaaactaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaagacatg 11275869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 33391514 - 33391593
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||  || ||||||||||||| | ||||||| |||||||    
T  33391514 agaaacttttgataaagatagggactaatttgaaatactaatagtttttgagactaatttgataatgacttacaaagaca 33391593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 20399019 - 20399100
Alignment:
Q  116 aaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtg 197  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||||||| || |||| ||||| | | ||| ||||||||    
T  20399019 aaagacaaggactaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagatagggaccaatttggtg 20399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 31051046 - 31050968
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 181  Q
    |||||||||||| ||||||   ||||| |||||||||||| |||||| ||||||||||| | || | ||||||||||||    
T  31051046 agaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaattagtgaatcacttataaagac 31050968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 987328 - 987373
Alignment:
Q  129 aatttgaaatattaatagagttagagactaatttgagattgactta 174  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  987328 aatttaaaatattaatagagttatagactaatttgagagtgactta 987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 8840022 - 8840083
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||  | ||||||| |||||    
T  8840022 aaacttttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgaga 8840083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 31046143 - 31046231
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttg 194  Q
    |||||||||| |||| || |||||| ||| |||||||||||||||  |||  |||||||||| | ||||| ||||||||| |||||||||    
T  31046143 aaacttttgacaaaggcatagactattttaaaatattaatagagtcggaggataatttgagaatcacttacaaagacatg-accgatttg 31046231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 8285238 - 8285301
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||||| ||||| | |||||| ||| ||||||||||| ||| || |||||||||||||    
T  8285238 agaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgaga 8285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 36184567 - 36184524
Alignment:
Q  131 tttgaaatattaatagagttagagactaatttgagattgactta 174  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||    
T  36184567 tttgaaatattaataaagttatagactaatttgagagtgactta 36184524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 27354351 - 27354306
Alignment:
Q  120 acagagactaatttgaaatattaatagagttagagactaatttgag 165  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||||||    
T  27354351 acagagactattttaaaatattaatatagttagggactaatttgag 27354306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 31066088 - 31066161
Alignment:
Q  109 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||| |||||||||||||| ||| |||||||||||||||  | | ||||||| ||| | ||||| |||||||    
T  31066088 ttttgataaagacagagactattttaaaatattaatagagtcgggggctaatttaagaatcacttacaaagaca 31066161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 9530610 - 9530547
Alignment:
Q  119 gacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  9530610 gacagagactagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagaca 9530547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 19121936 - 19121854
Alignment:
Q  100 tttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    ||||||| ||||||| ||||| ||| |||| ||| |||||||||||||||||| ||||| ||||||| || |||| |||||||    
T  19121936 tttagaagcttttgacaaagatagaaactagtttaaaatattaatagagttagcgactagtttgagagtggcttacaaagaca 19121854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 21969222 - 21969143
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| ||||||||||  || ||| ||||||||||||||| || ||||| ||||| | | |||||||||||||    
T  21969222 agaaacttttgataaagacagagtttattttaaaatattaatagagtcagtgactattttgaaaatcacttataaagaca 21969143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 3889971 - 3890080
Alignment:
Q  41 taaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatat 140  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||   ||||| |  |  || |||||||||||| |||||||   |||| |||  |||||    
T  3889971 taaaagtttctcaattaggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaagacatgaactagtttagaatat 3890070  T
Q  141 taatagagtt 150  Q
    ||||||||||    
T  3890071 taatagagtt 3890080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 19121985 - 19122062
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||| | | ||||||| | |||| ||||||||||||||||||| | |||||||||||| | ||||||| |||||    
T  19121985 agaaacttctaacaaagacataaactagtttgaaatattaatagagtcatagactaatttgaaagtgacttacaaaga 19122062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 21394323 - 21394254
Alignment:
Q  113 gagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||| ||| |||||||| ||| |||||||||||||||||  ||||||||||||| || |||| |||||||    
T  21394323 gagagagagagagactattttaaaatattaatagagttaatgactaatttgagagtggcttacaaagaca 21394254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 3889955 - 3889883
Alignment:
Q  128 taatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    ||||||||||| ||||||||||    ||||||||||||| ||| ||| ||||||||||||  |||||||||||    
T  3889955 taatttgaaatcttaatagagtggttgactaatttgagaatgaattacaaagacatgaactaatttggtggtt 3889883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 30747996 - 30747944
Alignment:
Q  130 atttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||| |||||| |||||||||||||| |||||||||| ||||||| |||||||    
T  30747996 atttaaaatatcaatagagttagagattaatttgagagtgacttagaaagaca 30747944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 3960852 - 3960931
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| ||| |||  ||||||||| ||||||||||||||| | |||||| ||||| | | ||||| |||||||    
T  3960852 agaaacttttgacaaacacaaggactaatttaaaatattaatagagtcatagactagtttgataataacttacaaagaca 3960931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 8447020 - 8446945
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||| | |||||||  ||||| ||||||||||||||||| | || ||||||||||| | | |||||||||||    
T  8447020 aaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaaga 8446945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 8455824 - 8455749
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||| | |||||||  ||||| ||||||||||||||||| | || ||||||||||| | | |||||||||||    
T  8455824 aaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaaga 8455749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 17333368 - 17333311
Alignment:
Q  107 acttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgag 165  Q
    |||||||| |||||| ||| ||| ||||||||||||||||||| || ||||||||||||    
T  17333368 acttttgacaaagac-gaggctagtttgaaatattaatagagtcagggactaatttgag 17333311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 17437604 - 17437558
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagt 149  Q
    |||||||||||| ||||||| ||||||| |||| |||||||||||||    
T  17437604 agaaacttttgataaagacaaagactaaattgatatattaatagagt 17437558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 17437745 - 17437695
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacat 85  Q
    ||||||||||||||| | |||||| || |||||| ||||||||||||||||    
T  17437745 ctttgttaaaagtttctcaattagatctttgtctctatgtttttgtcacat 17437695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 23765853 - 23765895
Alignment:
Q  44 aagtttgttaattaggtccttgtctttatgtttttgtcacatg 86  Q
    |||||| | ||||||||| ||||||||||||||||||||||||    
T  23765853 aagtttttcaattaggtcattgtctttatgtttttgtcacatg 23765895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 21969306 - 21969351
Alignment:
Q  135 aaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||||| |||| |||||||||||||||||| ||||| |||||    
T  21969306 aaatattaattgagtcagagactaatttgagattcacttacaaaga 21969351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 24794190 - 24794227
Alignment:
Q  125 gactaatttgaaatattaatagagttagagactaattt 162  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  24794190 gactaatttgaaacattaataaagttagagactaattt 24794227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 15965738 - 15965646
Alignment:
Q  53 aattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaata 145  Q
    |||||||| | ||||||||||||||||||||||| ||| | | ||  || | |||||||||| || || | |||||| ||| |||||||||||    
T  15965738 aattaggttcatgtctttatgtttttgtcacatgacgaaggacgtaattgaaaaacttttgacaaggatatagactagtttaaaatattaata 15965646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 55447182 - 55447261
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||| |||||||| | ||||| |||||||    
T  55447182 agaaacttttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttacaaagaca 55447261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 39840738 - 39840659
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| ||| |||  ||||| ||||||||||||||||||| |||||||||||||||| | ||||| |||||||    
T  39840738 agaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagaca 39840659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 38181429 - 38181332
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||||| |||||  ||||||| |||||||||||||||||||  | ||  ||||||||| |  |||||||||||||||||| |||| ||||||    
T  38181429 agaaacttttgataaagatggagactagtttgaaatattaatagagtccgtgataaatttgagagtagcttataaagacatgaaccaatttagtggtt 38181332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 33075219 - 33075349
Alignment:
Q  53 aattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaatagagttag 152  Q
    ||||||||| |||||||||| |||||||||  || ||||  || |  || | ||| |||||| ||| |||  ||||||||| ||||||||||||| |||     
T  33075219 aattaggtcattgtctttatatttttgtcatgtgacgagagatataattgataaatttttgacaaaaacaatgactaatttaaaatattaatagatttaa 33075318  T
Q  153 agactaatttgagattgacttataaagacat 183  Q
     || |||||||||| ||||||||||||||||    
T  33075319 tgattaatttgagagtgacttataaagacat 33075349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 27812261 - 27812204
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgagattgacttataaagacat 183  Q
    |||||||||||||||||||||| | |||||||||||| ||| ||||||| ||||||||    
T  27812261 actaatttgaaatattaatagactcagagactaatttaagaatgacttacaaagacat 27812204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 20124246 - 20124322
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||| ||| |||  ||||| ||||||||||| ||||||| |||||||||||||| | ||||||| |||||||    
T  20124246 aaacttttgacaaaaacaatgactattttgaaatattgatagagtcagagactaatttga-aatgacttacaaagaca 20124322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 29504832 - 29504963
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 134  Q
    |||| |||||||||| | |||||||||  |||||||||| |||||||||||| ||||| |     |  |||||||||| | ||||| | | |||| |||     
T  29504832 ctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagataaaaactagttta 29504931  T
Q  135 aaatattaatagagttagagactaatttgaga 166  Q
    ||||||||||||||||   |||||||||||||    
T  29504932 aaatattaatagagttgaggactaatttgaga 29504963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 45965804 - 45965875
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgactta 174  Q
    |||||||||||| ||||| |   |||| ||||||||||||||||||| | | |||||||||||| |||||||    
T  45965804 agaaacttttgaaaaagataataactagtttgaaatattaatagagtcacaaactaatttgagagtgactta 45965875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 46164085 - 46164148
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| ||||| |||||||||||| | |||||  |||||||||||| || |||||||||||||    
T  46164085 agaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgaga 46164148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 40472909 - 40472831
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 181  Q
    |||||||||||| ||||| | | |||| ||| |||| |||||||||| | |||||||||||||| | ||||| ||||||    
T  40472909 agaaacttttgacaaagaaataaactagtttaaaattttaatagagtcaaagactaatttgagagtaacttacaaagac 40472831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 40860967 - 40861029
Alignment:
Q  119 gacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 181  Q
    |||| |||||||||||||||||||||| | | ||||||||| || ||| ||||||| ||||||    
T  40860967 gacaaagactaatttgaaatattaataaaatcagagactaaattaagaatgacttacaaagac 40861029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 31300371 - 31300428
Alignment:
Q  109 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| ||||||| | | |||||| |||||| |||||||||| ||||||||||||||    
T  31300371 ttttgacaaagacaaaaattaatttaaaatataaatagagttatagactaatttgaga 31300428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 39840892 - 39840969
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    ||||| |||| | ||||| || ||||| ||||||||||||||| ||||||  |||||||||||| | ||||| |||||    
T  39840892 agaaaattttaacaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaaga 39840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 42045848 - 42045771
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||| | |||||  ||||| |||||||||||||||||||||  || |||||||||  | ||||| |||||||    
T  42045848 aaacttttgacatagacaatgactattttgaaatattaatagagttatggattaatttgaggatcacttacaaagaca 42045771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 1431476 - 1431532
Alignment:
Q  110 tttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    ||||| |||||||| ||||||||||| ||||||||||| ||   |||||||||||||    
T  1431476 tttgacaaagacagtgactaatttgagatattaatagaattgaggactaatttgaga 1431532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 3910287 - 3910247
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  3910287 actagtttaaaatattaatagagttagggactaatttgaga 3910247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 48338573 - 48338613
Alignment:
Q  124 agactaatttgaaatattaatagagttagagactaatttga 164  Q
    |||||| ||||| ||||||||||||| ||||||||||||||    
T  48338573 agactattttgatatattaatagagtcagagactaatttga 48338613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 49782221 - 49782277
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||| |||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  49782221 actattttgaaatattaatagagttatggactaatttgaaaaacacttataaagaca 49782277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 28504784 - 28504711
Alignment:
Q  109 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||| ||| |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||| |||||||    
T  28504784 ttttgacaaaaacagagactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagaca 28504711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 46410826 - 46410920
Alignment:
Q  106 aacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    ||||||||| |||||||||||||| |||||||||||| |||||| | ||||||| |||||| | ||||| |||||||   ||| |||||||||||    
T  46410826 aacttttgataaagacagagactattttgaaatattattagagtcatagactaaattgagaatcacttacaaagacaatgaccaatttggtggtt 46410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 10595501 - 10595581
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacat 183  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||  || |||||||| | || |||| ||||||||    
T  10595501 agaaacttttgacaaagacaatgactaatttgaaatattaatagagttatggattaatttgacaatgtcttacaaagacat 10595581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 6219772 - 6219625
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 134  Q
    |||||| |||||| | | |||||||||   |||||||||||||||||||||   |||| |  |  || ||||| |||||| |||||||| |||||||||     
T  6219772 ctttgtcaaaagtatctcaattaggtcaccgtctttatgtttttgtcacataatgagggacctaattgagaaatttttgacaaagacagtgactaattta 6219673  T
Q  135 aaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    ||||||||||| | | | |||||| ||| ||| |||||||||||||||    
T  6219672 aaatattaataaaatcatagactagtttaagaatgacttataaagaca 6219625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 7790411 - 7790481
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgactta 174  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||| | | |||||||||||| |||||||    
T  7790411 agaaacttttgataaagatagaaactaatttgaaatattaatagagtcata-actaatttgagaatgactta 7790481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 8793018 - 8792967
Alignment:
Q  131 tttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  8793018 tttgaaatattaatagagttggagactaatttgagagtgacttacaaagaca 8792967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 10377568 - 10377643
Alignment:
Q  125 gactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    ||||||||||||||||||||||||| | |||||||||||| | ||||||| ||||||| | ||| | |||||||||    
T  10377568 gactaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaagacagggaccaacttggtggtt 10377643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 6219766 - 6219847
Alignment:
Q  119 gacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||| |||||| ||| ||||||||||||||||||||||  |||||||| || |||| ||||||||||| | |||| ||||||    
T  6219766 gacaaagactagtttaaaatattaatagagttagagacagatttgagaatggcttacaaagacatgaagcaatttagtggtt 6219847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 27293336 - 27293283
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgagattgacttataaag 179  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||    
T  27293336 actaatttgaaatattaatagagtcagagactaatttgagaatgatttacaaag 27293283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 27562748 - 27562671
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||||  | |||||| |||| |||| || |||||    
T  27562748 agaaacttttgacaaagacagaaattaatttgaaatattaatagagttatggtctaattcgagaatgacatacaaaga 27562671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 38576648 - 38576576
Alignment:
Q  108 cttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    ||||||| |||||||||||||  ||||||||||||||||| | | |||||||||||||| ||| ||| |||||    
T  38576648 cttttgataaagacagagactggtttgaaatattaatagaatcaaagactaatttgagaatgatttacaaaga 38576576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 23399607 - 23399510
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaata---ttaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtg 197  Q
    |||||||||||| ||| |||  |||||||||||||||   ||||||||||||  ||||||||||| ||| ||||| ||||||||| ||| | ||||||    
T  23399607 agaaacttttgacaaaaacaatgactaatttgaaatagtattaatagagttaaggactaatttgatattaacttagaaagacatgcaccaaattggtg 23399510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 15395259 - 15395209
Alignment:
Q  116 aaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||||||||||    
T  15395259 aaagacagagactattttaaaatattaatagagtcatagactaatttgaga 15395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 38783971 - 38783894
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||||||| |||||||  ||||| ||| ||||||||||||||| |  ||||||||||| | ||||||| |||||    
T  38783971 agaaacttttgacaaagacaatgactattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaaga 38783894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 34835667 - 34835619
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagtta 151  Q
    |||||||||||| |||||||||||||| ||||||||||| ||| |||||    
T  34835667 agaaacttttgacaaagacagagactagtttgaaatattgataaagtta 34835619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 40650039 - 40650104
Alignment:
Q  131 tttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtg 197  Q
    |||||||||||||| ||||||| ||||||||||||| | ||||| ||||||||| ||| | ||||||    
T  40650039 tttgaaatattaatggagttag-gactaatttgagaatcacttacaaagacatggaccaaattggtg 40650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 4066984 - 4066923
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttga 164  Q
    |||||||||||| |||||||| ||| | |||||| |||||||||||| || ||| |||||||    
T  4066984 agaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 27293426 - 27293503
Alignment:
Q  117 aagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttg 194  Q
    ||||||| | ||| ||||||||||||||| ||| | |||||||||| ||| ||||||| ||||| || |||| |||||    
T  27293426 aagacaggggctagtttgaaatattaataaagtcatagactaatttaagaatgacttacaaagatataaaccaatttg 27293503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 34835740 - 34835777
Alignment:
Q  125 gactaatttgaaatattaatagagttagagactaattt 162  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  34835740 gactaatttaaaatattaatagagttagaaactaattt 34835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 27293350 - 27293394
Alignment:
Q  42 aaaagtttgttaattaggtccttgtctttatgtttttgtcacatg 86  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||    
T  27293350 aaaagtttctcaattaggtctttgtctttatgtttttgtaacatg 27293394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 46410722 - 46410682
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaata 145  Q
    |||||||||| |||||| ||||||| |||||||||||||||    
T  46410722 aaacttttgacaaagactgagactattttgaaatattaata 46410682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 122547 - 122604
Alignment:
Q  109 ttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  122547 ttttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgaga 122604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 10028730 - 10028633
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgaaccgatttggtggtt 200  Q
    |||||||||||  || || | |||||||||||||||||||||||||| || ||||||||||||| ||||||| ||| ||||  | | |||||||||||    
T  10028730 agaaacttttggcaaggataaagactaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttggtggtt 10028633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 10028822 - 10028741
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatg 184  Q
    |||||||||||  ||||| ||||||| ||||||||||||||||||||  | ||||||||||||| ||||||| ||| |||||    
T  10028822 agaaacttttggcaaagatagagactgatttgaaatattaatagagtcggtgactaatttgagaatgacttacaaatacatg 10028741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 33229635 - 33229497
Alignment:
Q  36 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 135  Q
    ||||| |||||||| | |||||| ||| ||||||||||||||||||||||| ||||| |  |  || ||||||||||      |||| |||||| |||||    
T  33229635 tttgtcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattgagaaactttt------gacaaagactagtttga 33229542  T
Q  136 aatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    ||||||||||| ||| | |||||||||||||  |||||| |||||    
T  33229541 aatattaatagggttggggactaatttgagagcgacttacaaaga 33229497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 21136664 - 21136587
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||| ||||| |  ||||| ||||||||||||||||||| | |||||||||||||| ||||||  |||||||    
T  21136664 aaacttttgacaaagataaggactattttgaaatattaatagagtcaaagactaatttgagaatgactttaaaagaca 21136587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 10028876 - 10028953
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||| ||||| |||||||  ||||| ||||||||||||||| ||| | |||||||||||||| |||| || |||||||    
T  10028876 aaacctttgaaaaagacaacgactagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaagaca 10028953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 23961644 - 23961725
Alignment:
Q  104 gaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatga 185  Q
    ||||||||||| ||||  || ||||| |||||||||||||| || | ||||||| |||||| | ||||||| ||||||||||    
T  23961644 gaaacttttgataaagttagggactattttgaaatattaattgaatcagagactgatttgaaaatgacttacaaagacatga 23961725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 41687849 - 41687901
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgagattgacttataaa 178  Q
    |||| ||||||||||||||||||| | | |||||||||||| |||||||||||    
T  41687849 actagtttgaaatattaatagagtcacaaactaatttgagagtgacttataaa 41687901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 5840411 - 5840352
Alignment:
Q  124 agactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacat 183  Q
    |||||| ||| ||||||||||||| | |||||||||||||||| | ||||| ||||||||    
T  5840411 agactattttaaaatattaatagaatcagagactaatttgagagtaacttacaaagacat 5840352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 23768825 - 23768775
Alignment:
Q  116 aaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||||||| ||| ||||||||||| | ||| ||||||||||||||    
T  23768825 aaagacagagactattttaaaatattaataaaattatagactaatttgaga 23768775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 10028813 - 10028854
Alignment:
Q  42 aaaagtttgttaattaggtccttgtctttatgtttttgtcac 83  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  10028813 aaaagtttctcaattaggtccatgtctttatgtttttgtcac 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 5846951 - 5846999
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcac 83  Q
    ||||||| ||||||| | ||||||||| |||||| ||||||||||||||    
T  5846951 ctttgtttaaagtttttcaattaggtcattgtctctatgtttttgtcac 5846999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 36478557 - 36478611
Alignment:
Q  126 actaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||    
T  36478557 actaatttgaaatattgataaagttataaactaatttgagattgacttataaaga 36478611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 21248998 - 21249057
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttga 164  Q
    |||||||||| |||||  ||||||||||| ||||||||||| ||||||| ||||||||||    
T  21248998 aaacttttgacaaagatggagactaatttaaaatattaataaagttagaaactaatttga 21249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 41008922 - 41008993
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgactta 174  Q
    |||||||||| | ||||| |||||||| ||| ||||||||||||||| ||||| |||||||| | |||||||    
T  41008922 agaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgactta 41008993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 42709996 - 42709917
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    |||||||||||| |||||||  ||||| ||| |||||||||||||||  |||||| |||||||| | ||||| |||||||    
T  42709996 agaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagaca 42709917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 10524976 - 10525114
Alignment:
Q  36 tttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttga 135  Q
    ||||| |||||||| | |||||| ||| | ||||||||||||||||||||| ||||| |  |  || ||||||||||      |||| |||||| |||||    
T  10524976 tttgtcaaaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattgagaaactttt------gacaaagactagtttga 10525069  T
Q  136 aatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    ||||||||||| ||  | ||| ||||||||| ||||||| |||||    
T  10525070 aatattaatagggtcggggacaaatttgagagtgacttacaaaga 10525114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 30935271 - 30935416
Alignment:
Q  35 ctttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttg 134  Q
    |||||| |||||||| | | |||| ||||| ||||||||||||||||||||| ||||| |  |  || |     |||||| ||||| || || || ||||    
T  30935271 ctttgtcaaaagtttttcacttagatccttatctttatgtttttgtcacatgacgagggacctaattgaattttttttgacaaagatagggattagtttg 30935370  T
Q  135 aaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    ||||||||||| |||  ||||||||||||||| ||||||| |||||    
T  30935371 aaatattaataaagtcggagactaatttgagagtgacttacaaaga 30935416  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 6026 - 6086
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttg 163  Q
    |||||| ||||| ||||||| |||||||||||||||||||| | ||| | |||||||||||    
T  6026 agaaacgtttgataaagacaaagactaatttgaaatattaacaaagtcaaagactaatttg 6086  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 3248445 - 3248532
Alignment:
Q  110 tttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga-ttgacttataaagacatgaaccgatttggtg 197  Q
    ||||| |||||||||||||| ||||| ||||||||| ||| | |||||||||| ||| |||| ||||||||||| | ||| ||||||||    
T  3248445 tttgacaaagacagagactattttgacatattaatatagtcaaagactaatttaagagttga-ttataaagacagggaccaatttggtg 3248532  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 3248399 - 3248336
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| ||||| ||||||||| |||| ||||| ||||||||| ||| ||| ||||||||||||    
T  3248399 agaaacatttgacaaagacagaaactattttgagatattaataaagtcagatactaatttgaga 3248336  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 26752017 - 26752084
Alignment:
Q  105 aaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgact 172  Q
    |||||||||| ||||||| |||||| ||| ||||| ||| | ||| |||||||||||||||| |||||    
T  26752017 aaacttttgacaaagacaaagactattttaaaataataacaaagtcagagactaatttgagagtgact 26752084  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 12427916 - 12428006
Alignment:
Q  55 ttaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggtttagaaacttttgagaaagacagagactaatttgaaatattaata 145  Q
    ||||||| |||||||||||||||||||||||| ||||  |     || | |||||||||| |||||||  ||||| |||||||||||||||    
T  12427916 ttaggtcattgtctttatgtttttgtcacatgacgagagaccaaattgaaaaacttttgacaaagacatggactagtttgaaatattaata 12428006  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 12427890 - 12427833
Alignment:
Q  125 gactaatttgaaatattaatagagttagagactaatttgagattgacttataaagaca 182  Q
    ||||||||| ||||||||||||||| |   |||||||||||| ||||||| |||||||    
T  12427890 gactaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaagaca 12427833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 16830371 - 16830294
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 180  Q
    |||||||| ||| |||||||   |||| |||| |||||||||||| || || |||||||||||| ||||||| |||||    
T  16830371 agaaacttatgacaaagacatgcactagtttggaatattaatagaatttgacactaatttgagagtgacttacaaaga 16830294  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 32047328 - 32047272
Alignment:
Q  110 tttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    ||||| |||||||||||| | |||||  |||||||||||| |||||| |||||||||    
T  32047328 tttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgaga 32047272  T

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Target: scaffold0528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 1895 - 1973
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagac 181  Q
    |||||||||||| ||||||   ||||| |||||||||||| |||||| ||||||||||| | || | ||||||||||||    
T  1895 agaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaattagtgaatcacttataaagac 1973  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 6220 - 6283
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||||||| | |||| || | |||| ||||||||||||||||||| | ||||||||||||||    
T  6220 agaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgaga 6283  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 17179 - 17116
Alignment:
Q  103 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgaga 166  Q
    |||||| ||||| ||||||||  |||| ||| |||||||||||||||| | |||||||||||||    
T  17179 agaaacgtttgacaaagacaggaactagtttaaaatattaatagagtttgggactaatttgaga 17116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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