View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_20 (Length: 298)
Name: NF1729_high_20
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 42393082 - 42392805
Alignment:
| Q |
14 |
attacaatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaatattgttaagaata |
113 |
Q |
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| T |
42393082 |
attaccatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaatgttgttaagaata |
42392983 |
T |
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| Q |
114 |
gcaattcaatgagcttctacttacggagagcaccatttatcattgctggagtttttaacaattttcaagtatttgtctgacatacaccatatgagacact |
213 |
Q |
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| T |
42392982 |
gcaattcaacgagcttctacttacggagagcaccattgatcattgctagagtttttaacaattttcaagtatttgtctaacatacaccatatgagacact |
42392883 |
T |
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| Q |
214 |
tctctaccctagaaaccacctatcatatgaatattgatcaagggaatctagattcagcactcaatgctagtataatct |
291 |
Q |
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| T |
42392882 |
tctctaccctagaaaccacctatcatatgaatattgatcaagggaatctagattcagcgctcaatgctagtataatct |
42392805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 42376496 - 42376447
Alignment:
| Q |
52 |
gtgtgtattctatgattgttgatgcttg-aaaattgttcaaaacttcaat |
100 |
Q |
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| T |
42376496 |
gtgtgtattctacgattgttgatgcttgtaaaattgttcaaaacttcaat |
42376447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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