View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_high_29 (Length: 248)

Name: NF1729_high_29
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_high_29
NF1729_high_29
[»] chr8 (13 HSPs)
chr8 (108-248)||(41403993-41404146)
chr8 (106-159)||(6911046-6911099)
chr8 (106-159)||(14999188-14999241)
chr8 (106-159)||(15009089-15009142)
chr8 (106-159)||(43801702-43801755)
chr8 (108-159)||(16324861-16324912)
chr8 (106-147)||(6911260-6911301)
chr8 (109-147)||(16325080-16325118)
chr8 (106-160)||(22781071-22781125)
chr8 (109-159)||(41722061-41722111)
chr8 (106-159)||(8489390-8489443)
chr8 (106-159)||(43801487-43801540)
chr8 (108-148)||(22781285-22781325)
[»] chr2 (18 HSPs)
chr2 (106-160)||(21265793-21265847)
chr2 (106-159)||(4371471-4371524)
chr2 (106-159)||(12232580-12232633)
chr2 (106-159)||(22563227-22563280)
chr2 (108-159)||(29893030-29893081)
chr2 (106-159)||(21265580-21265633)
chr2 (106-159)||(22563441-22563494)
chr2 (106-159)||(17200095-17200148)
chr2 (106-153)||(17200309-17200356)
chr2 (124-159)||(33491417-33491452)
chr2 (106-160)||(20296647-20296701)
chr2 (106-160)||(34645563-34645617)
chr2 (106-159)||(34645777-34645830)
chr2 (111-153)||(156971-157013)
chr2 (106-159)||(20296279-20296332)
chr2 (106-134)||(4371554-4371582)
chr2 (107-151)||(4682781-4682825)
chr2 (106-134)||(33491362-33491390)
[»] chr7 (13 HSPs)
chr7 (106-159)||(35207195-35207248)
chr7 (106-159)||(35207406-35207459)
chr7 (108-159)||(39983870-39983921)
chr7 (108-159)||(19318452-19318503)
chr7 (108-159)||(25048257-25048308)
chr7 (109-159)||(29474646-29474696)
chr7 (106-159)||(19318379-19318432)
chr7 (106-148)||(48006355-48006397)
chr7 (106-159)||(2834430-2834483)
chr7 (108-149)||(28547512-28547553)
chr7 (106-159)||(35363335-35363388)
chr7 (106-134)||(6408485-6408513)
chr7 (106-134)||(39983783-39983811)
[»] chr4 (22 HSPs)
chr4 (106-159)||(50544273-50544326)
chr4 (106-159)||(42475893-42475946)
chr4 (106-159)||(54316060-54316113)
chr4 (109-159)||(46993084-46993134)
chr4 (106-159)||(7061989-7062042)
chr4 (106-159)||(17914979-17915032)
chr4 (106-159)||(21785929-21785982)
chr4 (106-148)||(5466080-5466122)
chr4 (108-149)||(8538360-8538401)
chr4 (106-159)||(11789876-11789929)
chr4 (106-159)||(23655299-23655352)
chr4 (108-160)||(1025139-1025191)
chr4 (111-159)||(24673957-24674005)
chr4 (106-149)||(11790093-11790136)
chr4 (109-159)||(3556383-3556433)
chr4 (106-144)||(19037951-19037989)
chr4 (106-160)||(32591177-32591231)
chr4 (106-159)||(5465870-5465923)
chr4 (106-159)||(9551456-9551509)
chr4 (106-134)||(3556596-3556624)
chr4 (106-134)||(17914755-17914783)
chr4 (106-134)||(26297356-26297384)
[»] chr5 (12 HSPs)
chr5 (106-159)||(31193982-31194035)
chr5 (106-159)||(31194196-31194249)
chr5 (106-159)||(36955525-36955578)
chr5 (108-159)||(36955320-36955371)
chr5 (106-159)||(8754675-8754728)
chr5 (106-159)||(14076900-14076953)
chr5 (106-159)||(17370084-17370137)
chr5 (108-159)||(32347130-32347181)
chr5 (108-146)||(42546582-42546620)
chr5 (106-150)||(43449493-43449537)
chr5 (106-159)||(9862223-9862276)
chr5 (106-154)||(39634827-39634874)
[»] chr3 (15 HSPs)
chr3 (106-159)||(4041414-4041467)
chr3 (106-159)||(8799334-8799387)
chr3 (106-159)||(38499836-38499889)
chr3 (106-159)||(43797369-43797422)
chr3 (106-159)||(53197214-53197267)
chr3 (108-159)||(43797585-43797636)
chr3 (107-159)||(38500053-38500105)
chr3 (106-148)||(46883643-46883685)
chr3 (106-159)||(53197005-53197058)
chr3 (108-151)||(25349943-25349986)
chr3 (106-148)||(8657427-8657469)
chr3 (106-148)||(8799547-8799589)
chr3 (106-160)||(29828912-29828966)
chr3 (106-146)||(34937444-34937485)
chr3 (106-143)||(43797872-43797909)
[»] chr1 (15 HSPs)
chr1 (106-159)||(24883199-24883252)
chr1 (108-159)||(49777056-49777107)
chr1 (106-159)||(24882988-24883041)
chr1 (106-159)||(27171816-27171869)
chr1 (106-159)||(33156685-33156738)
chr1 (107-159)||(3385543-3385595)
chr1 (107-159)||(34970002-34970054)
chr1 (106-159)||(3385325-3385378)
chr1 (106-159)||(33400872-33400925)
chr1 (106-159)||(33401087-33401140)
chr1 (106-159)||(34622556-34622609)
chr1 (107-159)||(49776836-49776888)
chr1 (110-148)||(5772120-5772158)
chr1 (111-157)||(33156474-33156520)
chr1 (106-146)||(34970216-34970256)
[»] chr6 (7 HSPs)
chr6 (106-159)||(22748605-22748658)
chr6 (106-159)||(16125539-16125592)
chr6 (108-160)||(16125755-16125807)
chr6 (107-159)||(22748820-22748872)
chr6 (108-148)||(24194981-24195021)
chr6 (106-150)||(24197709-24197753)
chr6 (106-134)||(33277348-33277376)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 41403993 - 41404146
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat-------------actcctgtttttctacatattctcccaacacgaaa 194  Q
    |||||||||||||||||||||||||||||||||||| || |||| |||||||             |||||||||||||||||||||||||||||||||||    
T  41403993 cacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaactcctgtttttctacatattctcccaacacgaaa 41404092  T
Q  195 ttgcattccatctttctttgctccttctacacttctaaacattcgatcctcctc 248  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  41404093 ttgcattccatctttctctgctccttctacacttctaaacattcaatcctcctc 41404146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 6911099 - 6911046
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6911099 gccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaat 6911046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 14999241 - 14999188
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  14999241 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaat 14999188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 15009089 - 15009142
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaat 15009142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 43801702 - 43801755
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  43801702 gccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaat 43801755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 16324912 - 16324861
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  16324912 cacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaat 16324861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 6911260 - 6911301
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggag 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  6911260 gccacatgtcttgcatccaaaccctaaatggagtaaatggag 6911301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 16325080 - 16325118
Alignment:
Q  109 acatgtcttgcatccaaaccctaaatagagtaaatggag 147  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  16325080 acatgtcttgcatccaaaccctaaatggagtaaatggag 16325118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 22781125 - 22781071
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    |||||||| |||||||||||||||| ||| ||||||||| || ||||||||||||    
T  22781125 gccacatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaata 22781071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 41722061 - 41722111
Alignment:
Q  109 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||| | ||||||| ||||||| |||||||||||||||    
T  41722061 acatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaat 41722111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 8489443 - 8489390
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||||||||| || |||||| |||||| |||||||    
T  8489443 gccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaat 8489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 43801540 - 43801487
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| ||||||||| |||||| ||||||||| || |||||||||||    
T  43801540 gccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaat 43801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 22781285 - 22781325
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  22781285 cacatatcttgcatccaaaccctaaattgagtaaatggagc 22781325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 21265793 - 21265847
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21265793 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaata 21265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 4371524 - 4371471
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 4371471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 12232633 - 12232580
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12232633 gccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaat 12232580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 22563280 - 22563227
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22563280 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 22563227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 29893030 - 29893081
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29893030 cacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaat 29893081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 21265633 - 21265580
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  21265633 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaat 21265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 22563441 - 22563494
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  22563441 gccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaat 22563494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 17200148 - 17200095
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||    
T  17200148 gccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaat 17200095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 17200309 - 17200356
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagc 153  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  17200309 gccacatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 33491417 - 33491452
Alignment:
Q  124 aaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaat 33491452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 20296647 - 20296701
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    |||||||||||| |||||||  | ||||| |||||||||||||||||||||||||    
T  20296647 gccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaata 20296701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 34645617 - 34645563
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    ||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||    
T  34645617 gccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaata 34645563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 34645777 - 34645830
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||||||||| || ||||||||| | |||||||||    
T  34645777 gccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaat 34645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 157013 - 156971
Alignment:
Q  111 atgtcttgcatccaaaccctaaatagagtaaatggagcttagc 153  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||    
T  157013 atgtcttacatccaaatcctaaatggagtaaatggagcttagc 156971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 20296332 - 20296279
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||| ||||||| ||||||||||||||||  |||||||||| ||||||| ||||    
T  20296332 gccatatgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaat 20296279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 4371554 - 4371582
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  4371554 gccacatgtcttgcatccaaaccctaaat 4371582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 4682825 - 4682781
Alignment:
Q  107 ccacatgtcttgcatccaaaccctaaatagagtaaatggagctta 151  Q
    |||||||||||||||| |||| |||||| ||||||||| ||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaatgaagctta 4682781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 33491390 - 33491362
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  33491390 gccacatgtcttgcatccaaaccctaaat 33491362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 35207248 - 35207195
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35207248 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 35207195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 35207406 - 35207459
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  35207406 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaat 35207459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 39983870 - 39983921
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaat 39983921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 19318452 - 19318503
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaat 19318503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 25048257 - 25048308
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaat 25048308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 29474646 - 29474696
Alignment:
Q  109 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  29474646 acatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaat 29474696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 19318379 - 19318432
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||    
T  19318379 gccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaat 19318432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 48006355 - 48006397
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  48006355 gccacatgttttgcatccaaatcctaaatagagtaaatggagc 48006397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 2834430 - 2834483
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||| ||| ||||||||||||||| || |||||||| ||||||||||||    
T  2834430 gccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaat 2834483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 28547553 - 28547512
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagct 149  Q
    ||||||||||||||||||| ||||||| || |||||||||||    
T  28547553 cacatgtcttgcatccaaaacctaaattgactaaatggagct 28547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 35363388 - 35363335
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||| ||||||| |||| |||||| ||||||||| | ||||||||||||    
T  35363388 gccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaat 35363335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 6408485 - 6408513
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  6408485 gccacatgtcttgcatccaaaccctaaat 6408513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 39983811 - 39983783
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  39983811 gccacatgtcttgcatccaaaccctaaat 39983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 50544326 - 50544273
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50544326 gccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaat 50544273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 42475946 - 42475893
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42475946 gccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaat 42475893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 54316060 - 54316113
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaat 54316113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 46993134 - 46993084
Alignment:
Q  109 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  46993134 acatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaat 46993084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 7062042 - 7061989
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  7062042 gccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaat 7061989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17914979 - 17915032
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  17914979 gccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaat 17915032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 21785929 - 21785982
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||  ||||||||||| |||||| ||||||||||||||||||||||||    
T  21785929 gccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaat 21785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 5466080 - 5466122
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    |||||||||||| ||||||||||||||||||||||||| ||||    
T  5466080 gccacatgtcttacatccaaaccctaaatagagtaaatagagc 5466122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 8538360 - 8538401
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagct 149  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  8538360 cacatgtcttgcatccaaaccctaaatggactaaatggagct 8538401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 11789929 - 11789876
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||| ||||||||| ||||||||||| ||||||||| ||||| ||||||||    
T  11789929 gccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaat 11789876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 23655299 - 23655352
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||| ||||||||||| || |||||| |||||| |||||||    
T  23655299 gccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaat 23655352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 1025139 - 1025191
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    ||||| |||||||||||||| |||||| ||||||||| ||||||||| |||||    
T  1025139 cacatatcttgcatccaaactctaaattgagtaaatgaagcttagccaaaata 1025191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 24673957 - 24674005
Alignment:
Q  111 atgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||| ||||||||| |||||||||||||||| || |||||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaat 24674005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 11790093 - 11790136
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagct 149  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  11790093 gccacatgtcttgcatccaaaccctaaatgaaataaatggagct 11790136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 3556433 - 3556383
Alignment:
Q  109 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||| ||||| ||||||||| || ||||| |||||    
T  3556433 acatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaat 3556383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 19037951 - 19037989
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatg 144  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  19037951 gccacatgtcttgcatccaaatcctaaatggagtaaatg 19037989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 32591231 - 32591177
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    ||||||| | |||||| |||||| ||||| |||||||||||||||| ||||||||    
T  32591231 gccacatattttgcatacaaaccttaaatggagtaaatggagcttaacctaaata 32591177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 5465923 - 5465870
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||| |||||||||||  |||||||| | ||||||||||||    
T  5465923 gccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaat 5465870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 9551456 - 9551509
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||| ||||||| ||||||| |||||||| |||||||||||| |||| ||||||    
T  9551456 gccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaat 9551509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 3556596 - 3556624
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  3556596 gccacatgtcttgcatccaaaccctaaat 3556624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 17914783 - 17914755
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  17914783 gccacatgtcttgcatccaaaccctaaat 17914755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 26297384 - 26297356
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  26297384 gccacatgtcttgcatccaaaccctaaat 26297356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 31194035 - 31193982
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31194035 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 31193982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 31194196 - 31194249
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31194196 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 31194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 36955525 - 36955578
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  36955525 gccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaat 36955578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 36955371 - 36955320
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 36955320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 8754728 - 8754675
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  8754728 gccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaat 8754675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 14076900 - 14076953
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  14076900 gccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaat 14076953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 17370137 - 17370084
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  17370137 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaat 17370084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 32347130 - 32347181
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||| |||||||||| ||||| |||||| |||||||||||||||||    
T  32347130 cacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaat 32347181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 42546582 - 42546620
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatgga 146  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  42546582 cacatgtcttgcatccaaaccctaaatggagtaaatgga 42546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 43449537 - 43449493
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagctt 150  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||    
T  43449537 gccacatgtcttgcatccaaagcctaaatagactaaattgagctt 43449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 9862223 - 9862276
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||| ||||||||||||||||||||| ||||||| | | |||| |||||||    
T  9862223 gccacatatcttgcatccaaaccctaaatggagtaaacgaaacttaccctaaat 9862276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 39634874 - 39634827
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcc 154  Q
    |||||||||||| |||||||||||| |||  ||||||||||||||||||    
T  39634874 gccacatgtcttacatccaaaccct-aatgaagtaaatggagcttagcc 39634827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 4041414 - 4041467
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4041414 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 4041467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 8799387 - 8799334
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  8799387 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaat 8799334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 38499889 - 38499836
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  38499889 gccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaat 38499836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 43797422 - 43797369
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  43797422 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 43797369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 53197214 - 53197267
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  53197214 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 53197267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 43797585 - 43797636
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  43797585 cacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaat 43797636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 38500053 - 38500105
Alignment:
Q  107 ccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  38500053 ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaat 38500105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 46883643 - 46883685
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  46883643 gccacatgtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 53197058 - 53197005
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  53197058 gccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaat 53197005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 25349943 - 25349986
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagctta 151  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  25349943 cacatgtcttacatccaaaccctaaatagaataaatggagctta 25349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 8657469 - 8657427
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  8657469 gccacatgtcttgcattcaaaccctaaatggagtaaatggagc 8657427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 8799547 - 8799589
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  8799547 gccacatgtcttgcatctaaaccctaaatggagtaaatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 29828912 - 29828966
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    ||||||| |||| |||||||| ||||||| || ||||||||||||||| ||||||    
T  29828912 gccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaata 29828966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 34937485 - 34937444
Alignment:
Q  106 gccacatgtcttgcatcca-aaccctaaatagagtaaatgga 146  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  34937485 gccacatgtcttgcatccataaccctaaatagactaaatgga 34937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 43797872 - 43797909
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaat 143  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  43797872 gccacatgtcttgcatccaagccctaaatggagtaaat 43797909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 24883199 - 24883252
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  24883199 gccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 24883252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 49777056 - 49777107
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  49777056 cacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaat 49777107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 24883041 - 24882988
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  24883041 gccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaat 24882988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 27171869 - 27171816
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||    
T  27171869 gccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaat 27171816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 33156685 - 33156738
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||    
T  33156685 gccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaat 33156738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 3385543 - 3385595
Alignment:
Q  107 ccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||| |||| |||||||||||||||| ||||||||||||||| ||||||||    
T  3385543 ccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaat 3385595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 34970054 - 34970002
Alignment:
Q  107 ccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  34970054 ccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaat 34970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 3385378 - 3385325
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||||||||||||||| | ||||| | ||||||||||||||    
T  3385378 gccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaat 3385325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 33400925 - 33400872
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||| ||| |||||||||| ||||| |||||||||||||||||| |||||    
T  33400925 gccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaat 33400872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 33401087 - 33401140
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||    
T  33401087 gccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaat 33401140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 34622556 - 34622609
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||| |||||| ||||| |||||| |||||||||| ||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaat 34622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 49776888 - 49776836
Alignment:
Q  107 ccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||| ||||||| ||||||||  |||||||| |||||    
T  49776888 ccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaat 49776836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 5772120 - 5772158
Alignment:
Q  110 catgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  5772120 catgtcttgcatccaaaccttaaatagagtagatggagc 5772158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 33156520 - 33156474
Alignment:
Q  111 atgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaa 157  Q
    ||||||| ||||||||| |||||| ||||||||||||| ||||||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcctaa 33156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 34970216 - 34970256
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatgga 146  Q
    |||||||||||| |||||||||| |||||| ||||||||||    
T  34970216 gccacatgtcttacatccaaaccttaaataaagtaaatgga 34970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 22748658 - 22748605
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||    
T  22748658 gccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaat 22748605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 16125592 - 16125539
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    |||||||||||||||||||||||||||||  | |||||| || |||||||||||    
T  16125592 gccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaat 16125539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 16125755 - 16125807
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 160  Q
    ||||| |||||||||||| | |||||| ||||||||||||||||| |||||||    
T  16125755 cacatatcttgcatccaagctctaaattgagtaaatggagcttagtctaaata 16125807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 22748820 - 22748872
Alignment:
Q  107 ccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 159  Q
    ||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||    
T  22748820 ccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaat 22748872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 24195021 - 24194981
Alignment:
Q  108 cacatgtcttgcatccaaaccctaaatagagtaaatggagc 148  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  24195021 cacatgtcttgcatccaaagcctaaatggactaaatggagc 24194981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 24197753 - 24197709
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaatagagtaaatggagctt 150  Q
    |||||||||||||||||||||  ||||||||| ||||| ||||||    
T  24197753 gccacatgtcttgcatccaaagtctaaatagactaaattgagctt 24197709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 33277376 - 33277348
Alignment:
Q  106 gccacatgtcttgcatccaaaccctaaat 134  Q
    |||||||||||||||||||||||||||||    
T  33277376 gccacatgtcttgcatccaaaccctaaat 33277348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University