View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_31 (Length: 241)
Name: NF1729_high_31
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 55072262 - 55072482
Alignment:
| Q |
8 |
aaattattcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaatgagattggtacaatatatctgcttctgttttcaccaacataaaca |
107 |
Q |
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| T |
55072262 |
aaattcttcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaatgagattggtacaatatatctgcttctgttttcaccaacataaaca |
55072361 |
T |
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| Q |
108 |
gcaaagtgaccttttgggacatcaagaggaagaccatgatcatcttcatcttgatcatactcatttttcttacctaagcttgaacatctccttaggattt |
207 |
Q |
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| T |
55072362 |
gcaaaatgaccttttgggacatcaagaggaagaccatgatcatcttcatcttgatcatactcatttttcttacctaagcttgaacatctccttaggattt |
55072461 |
T |
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| Q |
208 |
gcttaagcactgtgttctgag |
228 |
Q |
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| T |
55072462 |
gcttaagcactgtgttctgag |
55072482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 52993165 - 52993240
Alignment:
| Q |
72 |
acaatatatctgcttctgttttcaccaacataaacagcaaagtgaccttttgggacatcaagaggaagaccatgat |
147 |
Q |
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| T |
52993165 |
acaatgtacctgcttctgttttcaccaacatatacaacaaagtgaccttttggaacatccaaacgaagaccatgat |
52993240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 27393554 - 27393676
Alignment:
| Q |
8 |
aaattattcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaatgagattggtacaatatatctgcttctgttttcaccaacataaaca |
107 |
Q |
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| T |
27393554 |
aaattcttcttcagcttgacgaagtagtgattgaaactcaggatgagttaaaaaagatattggaacaatatatctactacggttttcacctacgtagact |
27393653 |
T |
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| Q |
108 |
gcaaagtgaccttttgggacatc |
130 |
Q |
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| ||| ||||||||||| ||||| |
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| T |
27393654 |
ggaaaatgaccttttggaacatc |
27393676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 32168574 - 32168505
Alignment:
| Q |
61 |
atgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaagtgaccttttgggacatc |
130 |
Q |
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| T |
32168574 |
atgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatc |
32168505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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