View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_32 (Length: 239)
Name: NF1729_high_32
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 32627631 - 32627450
Alignment:
| Q |
40 |
tagatattttttgttgattggttattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgt |
139 |
Q |
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| T |
32627631 |
tagatattttttgttgattggtgattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgt |
32627532 |
T |
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| Q |
140 |
caaggcttactacaagcaattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgc |
221 |
Q |
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| T |
32627531 |
caaggcttactacaagcaattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgc |
32627450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 7292713 - 7292559
Alignment:
| Q |
64 |
ttaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttactacaagcaattcca |
163 |
Q |
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||||||||||||| || ||| ||| ||||| ||||| |||||||| || | |||||| |||| ||||||||||||||||||||| ||||||| || |
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| T |
7292713 |
ttaattaggttcccgaaggtatagataacaataagggtaacatttacatcagcgacacaagtccctcaaatgtcgtcaaggcttactacgagcaatttca |
7292614 |
T |
|
| Q |
164 |
aatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggt |
218 |
Q |
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|| ||| || || |||||||||||||||| || | ||| | |||||||||||| |
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| T |
7292613 |
aagagacttgtcgatttttctcaagtgtcgcgcaaaggaattggttgaagggggt |
7292559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 32709202 - 32709038
Alignment:
| Q |
50 |
ttgttgattggttattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttac |
149 |
Q |
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| T |
32709202 |
ttgttgattggtgattatttaggttccggagaatgtgaacaacaataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtac |
32709103 |
T |
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| Q |
150 |
tacaagcaattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagg |
214 |
Q |
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||||| ||||| |||| ||||| ||||||||||||||||||||||| | ||| |||||||||| |
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| T |
32709102 |
tacaaccaatttcaaagtgatttttctctttttctcaagtgtcgtgcaaaggaagtagttgaagg |
32709038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 7297745 - 7297591
Alignment:
| Q |
67 |
attaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttactacaagcaattccaaat |
166 |
Q |
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|||||||||| |||||| ||| ||||| ||| |||||||||| || | |||||| |||| ||||| ||||| || ||||| | ||||| ||| |
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| T |
7297745 |
attaggttccggagggtatagagaacaataagagcaacatttacatcaactacacaagtccctcaaatgttgtcaaagcatactatgatcaatttaaaag |
7297646 |
T |
|
| Q |
167 |
agatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgc |
221 |
Q |
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||| ||||| ||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
7297645 |
agacttctcggtttttctcaagtgtcgtgcagaggaactagttgaagggggttgc |
7297591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 5811223 - 5811082
Alignment:
| Q |
73 |
ttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttactacaagcaattccaaatagattt |
172 |
Q |
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||||||||| || |||||||||||||||||||||||| | | ||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| |
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| T |
5811223 |
ttcctgaggttggagacaacaacaagggcaacatttacctgacgagcacaagcccctcaaatgtccacaaggcttactacaagcaatttcaaacagattt |
5811124 |
T |
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| Q |
173 |
ctctctttttctcaagtgtcgtgccgaagaaatagttgaagg |
214 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||| |
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| T |
5811123 |
ctctttttttctcaagtgtcgtgccgaagaactagttgaagg |
5811082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 21943341 - 21943183
Alignment:
| Q |
63 |
attaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttactacaagcaattcc |
162 |
Q |
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||||| ||||| ||| |||||| ||||||||| |||||||||||||| | | | ||||||||||| |||||| ||||||||||||| ||||||| | |
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| T |
21943341 |
attaaataggtccctaagggtgtagacaacaataagggcaacatttacttggcgaccacaagcccctcaaatgtcttcaaggcttactatgagcaatttc |
21943242 |
T |
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| Q |
163 |
aaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgc |
221 |
Q |
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| | |||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
21943241 |
atagagatttatctctttttctaaagtgtcgtgcccaagaactagttgaagggggttgc |
21943183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 221
Target Start/End: Original strand, 20116527 - 20116702
Alignment:
| Q |
46 |
ttttttgttgattggttattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggc |
145 |
Q |
| |
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|||||||| ||| ||| |||||||||||||| | |||| |||||||||||||||| ||||| ||| | | ||||||||| | |||||| ||||||| |
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| T |
20116527 |
ttttttgtcgatcggtgattaattaggttcccaatggtgtgaacaacaacaagggcaatatttacatagcgaacacaagcccatcaaatgtcttcaaggc |
20116626 |
T |
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| Q |
146 |
ttactacaagcaattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgc |
221 |
Q |
| |
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|| || | ||||| | || |||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |
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| T |
20116627 |
atattatgaacaatttcgtattgatttctctctttttctcaagtgtcgtgccaaagaattggttgaaggaggttgc |
20116702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 27736511 - 27736355
Alignment:
| Q |
58 |
tggttattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttactacaagca |
157 |
Q |
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|||| ||| |||||||||| |||||||| |||||||||||||| |||||||| | | ||||||||||||| || ||| ||||||||||||||||||| |
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| T |
27736511 |
tggtgattcattaggttccagagggtgctgacaacaacaagggaaacatttacctgacgagcacaagcccctcaaacgtcatcaaggcttactacaagca |
27736412 |
T |
|
| Q |
158 |
attccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagg |
214 |
Q |
| |
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||| | || |||||||||| ||||||| ||||||||| ||||| |||||||||| |
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| T |
27736411 |
atttcgaacagatttctctttttttcttcgatgtcgtgccaaagaattagttgaagg |
27736355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 8030369 - 8030530
Alignment:
| Q |
57 |
ttggttattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttactacaagc |
156 |
Q |
| |
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||||| |||| |||||||||| | |||| ||| || || ||||| |||||||| || | | |||||||||| || || |||| |||||| | ||| |
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| T |
8030369 |
ttggtgattacttaggttcctaaaggtgtagagaataataagggtaacatttacatggctaccacaagccccgcaaacgtgctcaacgcttaccatgagc |
8030468 |
T |
|
| Q |
157 |
aattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggt |
218 |
Q |
| |
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|||| |||| ||||||||| | ||||||||||||||||| |||||| | ||||| |||||| |
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|
| T |
8030469 |
aatttcaaagagatttctcattgtttctcaagtgtcgtgcagaagaacttgttgacgggggt |
8030530 |
T |
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