View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_33 (Length: 237)
Name: NF1729_high_33
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 17219751 - 17219533
Alignment:
| Q |
1 |
acaatcaagaattcaagatatagtgtgatgtttactagatattctaacaacgtctatatgctaacttagtaaacaaaacaatgagatgaaaggaaaagtt |
100 |
Q |
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| T |
17219751 |
acaatcaagaattcaagatatagtgtgatgtttactagatattctaacaacgtttatatgctaacttagtaaacaaaacaatgagatgaaaggaaaagtt |
17219652 |
T |
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| Q |
101 |
gaaacaaaatccaaacattatataatttcagcaaatctactcaattgtacaaacctcgagatatttttatgtaatgctatcaggaggaataacaccgttc |
200 |
Q |
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| T |
17219651 |
gaga-aaaatccaaacattatataatttcagcaaatctactcaattgtacaaacctcgagatatttttatgtaatgctatcaggaggaataacaccgttc |
17219553 |
T |
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| Q |
201 |
tttcctccagcttcaacaac |
220 |
Q |
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| T |
17219552 |
tttcctccagattcaacaac |
17219533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 17207188 - 17207106
Alignment:
| Q |
138 |
tactcaattgtacaaacctcgagatatttttatgtaatgctatcaggaggaataacaccgttctttcctccagcttcaacaac |
220 |
Q |
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|||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17207188 |
tactcaattgaacaaacctcaagatatttatatgtaatgctatcaggaggaataacaccattctttcctccagcttcaacaac |
17207106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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