View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_38 (Length: 235)
Name: NF1729_high_38
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43461173 - 43461395
Alignment:
| Q |
1 |
aataagaaatatcgtgatgatcatctattatagggtgacatttcttgtctctttattagtcatatactcatattgatctcttctctgaacacacactatg |
100 |
Q |
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| T |
43461173 |
aataagaaatatcgtgatgatcatctattatagggtgacatttcttgtctctttattagtcatatactcatattgatctcttctctgaacacacactatg |
43461272 |
T |
|
| Q |
101 |
acaataaatggacaaataatttgnnnnnnnctctattattaagnnnnnnnttattgctcatttttccaacactattacccagccgtacaatacaataatg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43461273 |
acaataaatggacaaataatttgtttttttctctattattaagaaaaaaattattgctcatttttccaacattattacccagccgtacaatacaataatg |
43461372 |
T |
|
| Q |
201 |
gaagaatcttgatgatatacatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
43461373 |
gaagaatcttgatgatatacatg |
43461395 |
T |
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