View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_39 (Length: 234)
Name: NF1729_high_39
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 54087855 - 54087637
Alignment:
| Q |
1 |
ttgagatgagcccattataaactttacatgccactcacttcagcataatgtataatacatagtgggatatacatcattttgatacgtgtaatccaaattc |
100 |
Q |
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| T |
54087855 |
ttgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacatagtgggatatacatgattttgatacgtgtaatccaaattc |
54087756 |
T |
|
| Q |
101 |
aagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaattcaagatgtaaaacatatgctgagatttgagaacgttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54087755 |
aagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaattcaagatgtaaaacatatgctgagatttgagaacgttatg |
54087656 |
T |
|
| Q |
201 |
gaagagttaccaagctatt |
219 |
Q |
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||||||||||||||||||| |
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| T |
54087655 |
gaagagttaccaagctatt |
54087637 |
T |
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