View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_40 (Length: 232)
Name: NF1729_high_40
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 44725201 - 44725420
Alignment:
| Q |
13 |
aatattggcattactcgaaaataaccctagtttgagccaattagtcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaaga |
112 |
Q |
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| T |
44725201 |
aatattggcattacttgaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaaga |
44725300 |
T |
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| Q |
113 |
gaacgagaggctaatggatctctaatgcactgaaggaaagattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaag |
212 |
Q |
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| T |
44725301 |
gaacgagaggctaatggatctctaatgcactgaaggaaatattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaag |
44725400 |
T |
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| Q |
213 |
caaaggaatcattgttacaa |
232 |
Q |
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|||||| ||||||||||||| |
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| T |
44725401 |
caaagggatcattgttacaa |
44725420 |
T |
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