View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_41 (Length: 231)
Name: NF1729_high_41
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_41 |
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| [»] scaffold0489 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 35991886 - 35992090
Alignment:
| Q |
13 |
aagaatatgctggtggatacta---gtgttttctccatttcagtcatggctcaaattttactaaagggacaaaaatttaattgttttannnnnnnagtta |
109 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
35991886 |
aagaatatgctggtggatactactagtgtcttctccatttcagtcatggctcaaattttactaaagggacacaaatttaattgttttatttttt-agtta |
35991984 |
T |
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| Q |
110 |
gctttgagtctccacgtatatatgttgggctggccttaacatgtggtcaattcctttaaaatagtagttgaactttcaaactcctcttcttgatttcaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35991985 |
gctttgagtctccacgtatatatgttgggctggccttaacatgtggtcaattcctttaaaataatagttgaactttcaaactcctcttcttgatttcaca |
35992084 |
T |
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| Q |
210 |
agaaat |
215 |
Q |
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|||||| |
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| T |
35992085 |
agaaat |
35992090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 35995489 - 35995623
Alignment:
| Q |
71 |
taaagggacaaaaatttaattgttttannnnnnnagttagctttgagtctccacgtatatatgttgggctggccttaacatgtggtcaattcctttaaaa |
170 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
35995489 |
taaagggacacaaatttaattgttttatttttt-agttagctttgagtctccacgtat----gttgggctggccttaacatgtggtcaattccttttaaa |
35995583 |
T |
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| Q |
171 |
tagtagttgaactttcaaactcctcttcttgatttcacaa |
210 |
Q |
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| T |
35995584 |
tatcggttgaactttcaaactcctcttcttgatttcacaa |
35995623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 35995401 - 35995459
Alignment:
| Q |
13 |
aagaatatgctggtggatactagtgttttctccatttcagtcatggctcaaattttact |
71 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35995401 |
aagaatatgctggtggatactagtgtcttctccatttcagtcatggctcaaattttact |
35995459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 73 - 208
Alignment:
| Q |
71 |
taaagggacaaaaatttaattgttttannnnnnnagttagctttgagtctccacgtatatatgttgggctggccttaacatgtggtcaattcctttaaaa |
170 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
73 |
taaagggacacaaatttaattgtttttattttttagttagctttgagtctccacgtat----gttgggctggccttaacatgtggtcaattccttttaaa |
168 |
T |
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| Q |
171 |
tagtagttgaactttcaaactcctcttcttgatttcacaa |
210 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |
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| T |
169 |
tatcggttgaactttcaaactcctcttcttgatttcacaa |
208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 1 - 43
Alignment:
| Q |
29 |
atactagtgttttctccatttcagtcatggctcaaattttact |
71 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1 |
atactagtgtcttctccatttcagtcatggctcaaattttact |
43 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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