View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_47 (Length: 221)
Name: NF1729_high_47
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 26664559 - 26664754
Alignment:
| Q |
13 |
ttatactaatattttacattattaggtaagcaagttgaaatcttactag----ccatattataaatacaaatcttaggttcattctccttaacaataaca |
108 |
Q |
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| T |
26664559 |
ttatactaatattttacattattaggtaagcaagttgaaatcttactagctagccatattataaatacaaatcttaggttcattctccttaacaataata |
26664658 |
T |
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| Q |
109 |
acaacaacatagtttctgcttcattttggttttattagtattcagataataatctctatctttcaccaaatgggatcaggttcctcaccttgtgct |
204 |
Q |
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| T |
26664659 |
ataacaacatagtttctgcttcattttggttttattagtattcagataataatctctatctttcaccaaatgggatcaggttcctcaccttgtgct |
26664754 |
T |
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