View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_high_8 (Length: 417)

Name: NF1729_high_8
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_high_8
NF1729_high_8
[»] chr2 (2 HSPs)
chr2 (7-403)||(1614879-1615269)
chr2 (11-388)||(24455839-24456209)
[»] chr8 (2 HSPs)
chr8 (11-388)||(43228075-43228444)
chr8 (167-366)||(14839131-14839323)
[»] chr3 (2 HSPs)
chr3 (159-390)||(49234306-49234533)
chr3 (159-388)||(49233735-49233959)
[»] chr1 (3 HSPs)
chr1 (159-388)||(50862518-50862741)
chr1 (335-388)||(47723984-47724037)
chr1 (335-388)||(47730976-47731029)
[»] chr7 (1 HSPs)
chr7 (167-366)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Original strand, 1614879 - 1615269
Alignment:
Q  7 aagaaaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1614879 aagaaaataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa 1614978  T
Q  107 agcaacaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaata 206  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  1614979 agcaacaggagaacaatacaaacagccggttaaaaagacaatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaata 1615077  T
Q  207 aaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgc 306  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615078 aaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgc 1615172  T
Q  307 tgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattctt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615173 tgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattctt 1615269  T

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Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 24456209 - 24455839
Alignment:
Q  11 aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |    
T  24456209 aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaacta 24456110  T
Q  111 acaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaa 209  Q
    ||||||||||||||||||||||| |||||||||||||||         ||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  24456109 acaggagaacaatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaa 24456011  T
Q  210 ccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgc 309  Q
    |||||| |     ||||||||| | |  | |||||||||||||||||  |||| |||||||| ||||||| ||||||||||||||||||||||||||||     
T  24456010 ccgatatg-----gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgt 24455918  T
Q  310 tgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 388  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  24455917 tgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgca 24455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 43228444 - 43228075
Alignment:
Q  11 aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagca 110  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43228444 aaatgagaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagca 43228345  T
Q  111 acaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaac 210  Q
    |||||||| |||||||||||||| |||||||||||| ||         |||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  43228344 acaggagaccaatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaac 43228246  T
Q  211 cgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgct 310  Q
    ||||| |      |||||||| |||  | ||||| |||||||||| | |||| ||||||| ||||| |  ||| ||||||| | | ||||||||||||||    
T  43228245 cgatatg-----ttgcagctggaac--acagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgct 43228153  T
Q  311 gcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 388  Q
    ||||||||||||||||||||  |||| ||| |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  43228152 gcactacattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgca 43228075  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 366
Target Start/End: Complemental strand, 14839323 - 14839131
Alignment:
Q  167 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 266  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 14839231  T
Q  267 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 366  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839230 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

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Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 159 - 390
Target Start/End: Original strand, 49234306 - 49234533
Alignment:
Q  159 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 258  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| ||||||||||||     
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca 49234400  T
Q  259 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-aga 357  Q
    |||| |||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||    
T  49234401 gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaaga 49234500  T
Q  358 aaatcacctcgatctctctccaaactatgcata 390  Q
    |||||||||||||||| ||||||| ||||||||    
T  49234501 aaatcacctcgatctcgctccaaattatgcata 49234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 388
Target Start/End: Original strand, 49233735 - 49233959
Alignment:
Q  159 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 258  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| |||||     
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca 49233829  T
Q  259 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 358  Q
    |||| |||| ||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49233830 gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa 49233929  T
Q  359 aatcacctcgatctctctccaaactatgca 388  Q
    ||||||||||||||| ||||||| ||||||    
T  49233930 aatcacctcgatctcgctccaaattatgca 49233959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 159 - 388
Target Start/End: Complemental strand, 50862741 - 50862518
Alignment:
Q  159 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 258  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| ||||||||||||     
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca 50862648  T
Q  259 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 358  Q
    |||| ||||||| |||||||  || |||||||| ||||||| || ||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  50862647 gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa 50862548  T
Q  359 aatcacctcgatctctctccaaactatgca 388  Q
    ||||||||||||||| ||||||| ||||||    
T  50862547 aatcacctcgatctcgctccaaattatgca 50862518  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
Q  335 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 388  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47723984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
Q  335 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 388  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 366
Target Start/End: Original strand, 27962367 - 27962559
Alignment:
Q  167 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 266  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 27962459  T
Q  267 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 366  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962460 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

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