View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_high_9 (Length: 412)
Name: NF1729_high_9
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 33643208 - 33643591
Alignment:
| Q |
16 |
aaatattgagaaaacgtgcttctgtat---tactaaaacatttgatgtggcaatatctgaatgaatagcaatttaaaatcatataataagatttaagttt |
112 |
Q |
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| T |
33643208 |
aaatattgagaaaacgtgcttctgtatatatactaaaacatttgatgtggcaatatctgaatgaatagcaatttaaaatcatataataagatttaagttt |
33643307 |
T |
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| Q |
113 |
cataaaattaaccaagattatcacacagatccatagttcctacggagactactaaaggacagaaaaatttaacaatctggcaaattggtaggtttgaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643308 |
cataaaattaaccaagattatcacacagatccatagttcctacggagactactaaaggacagaaaaatttaacaatctggcaaattggtaggtttgaaac |
33643407 |
T |
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| Q |
213 |
nnnnnnntgatacagttagaagttagtattattattaataaatctagacataaaaattgtcaccagtgctctgatttatgaaacattcacattaatattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643408 |
aaaaaaatgatacagttagaagttagtattattattaataaatctagacataaaaattgtcaccagtgctctgatttatgaaacattcacattaatattt |
33643507 |
T |
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| Q |
313 |
tgataaattctagtatnnnnnnncttgcaaatatttccagtggtgtgagttactttacttccaagttccaaccacccaactatt |
396 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33643508 |
tgataaattctagtataaaaaaacttgcaaatatttccagtggtgtgagttactttacttccaagttccaaccacccaactatt |
33643591 |
T |
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