View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_low_11 (Length: 406)

Name: NF1729_low_11
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_low_11
NF1729_low_11
[»] chr8 (10 HSPs)
chr8 (9-390)||(43907573-43907954)
chr8 (305-381)||(40280275-40280351)
chr8 (311-390)||(4558713-4558792)
chr8 (305-340)||(33553227-33553262)
chr8 (311-342)||(42237498-42237529)
chr8 (312-390)||(29699169-29699247)
chr8 (311-341)||(35374449-35374479)
chr8 (312-340)||(773294-773322)
chr8 (312-340)||(778354-778382)
chr8 (312-340)||(787788-787816)
[»] chr1 (10 HSPs)
chr1 (310-390)||(45234112-45234192)
chr1 (305-342)||(14737775-14737812)
chr1 (305-342)||(48748653-48748690)
chr1 (311-363)||(11211060-11211112)
chr1 (315-353)||(15477530-15477568)
chr1 (305-342)||(50319255-50319292)
chr1 (315-343)||(8081849-8081877)
chr1 (273-301)||(17631039-17631067)
chr1 (305-337)||(29834953-29834985)
chr1 (315-343)||(47002954-47002982)
[»] chr6 (7 HSPs)
chr6 (311-358)||(10728579-10728626)
chr6 (305-342)||(2205638-2205675)
chr6 (305-342)||(5731555-5731592)
chr6 (314-374)||(264302-264362)
chr6 (314-342)||(9093635-9093663)
chr6 (314-358)||(9559620-9559664)
chr6 (311-343)||(10749304-10749336)
[»] chr5 (6 HSPs)
chr5 (311-384)||(9202824-9202898)
chr5 (311-342)||(12595816-12595847)
chr5 (312-342)||(10363713-10363743)
chr5 (314-344)||(12425532-12425562)
chr5 (305-342)||(12242758-12242795)
chr5 (314-342)||(11835240-11835268)
[»] chr2 (9 HSPs)
chr2 (311-384)||(32633693-32633765)
chr2 (311-390)||(28803582-28803661)
chr2 (315-354)||(42457899-42457938)
chr2 (305-343)||(3227731-3227769)
chr2 (311-381)||(10150679-10150749)
chr2 (311-382)||(31228893-31228966)
chr2 (320-390)||(31461353-31461423)
chr2 (311-384)||(3673728-3673801)
chr2 (305-341)||(750460-750496)
[»] chr7 (5 HSPs)
chr7 (316-375)||(21853197-21853256)
chr7 (305-382)||(7244625-7244702)
chr7 (305-342)||(34035902-34035939)
chr7 (314-342)||(30180014-30180042)
chr7 (305-357)||(33601163-33601215)
[»] chr4 (6 HSPs)
chr4 (247-302)||(25487466-25487521)
chr4 (313-358)||(49803158-49803203)
chr4 (314-342)||(25885822-25885850)
chr4 (311-383)||(30024622-30024694)
chr4 (306-342)||(43505919-43505955)
chr4 (305-341)||(52294036-52294072)
[»] chr3 (5 HSPs)
chr3 (315-358)||(849609-849652)
chr3 (311-342)||(10101552-10101583)
chr3 (311-342)||(10212477-10212508)
chr3 (311-342)||(15304423-15304454)
chr3 (311-381)||(3182438-3182508)
[»] scaffold0024 (1 HSPs)
scaffold0024 (314-342)||(21357-21385)


Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Original strand, 43907573 - 43907954
Alignment:
Q  9 gaagaatatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagagatgggagcgtttcaagaaaactttcaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43907573 gaagaaaatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagaggtgggagcgtttcaagaaaactttcaat 43907672  T
Q  109 caagaaatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacacca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907673 caagaaatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacacca 43907772  T
Q  209 taacggtatttcacaccatatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatag 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907773 taacggtatttcacaccgtatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatag 43907872  T
Q  309 cttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907873 cttatgaaaacaatttgactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 43907954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 40280275 - 40280351
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 381  Q
    |||||||||||||||||||| |||||||||||||||||    |||||||||||| ||| ||  ||||||||||||||    
T  40280275 atagcttatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataa 40280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 4558792 - 4558713
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    |||||||| ||||||||||||||||||||||||   |||||||| ||| ||  ||| |||||| || |||||| ||||||    
T  4558792 tatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttatg 4558713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 33553262 - 33553227
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||| |||||||||||||||    
T  33553262 atagcttatgaaaacaatttgactttattttatctt 33553227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 42237498 - 42237529
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  42237498 tatgaaaacaatttaactttattttatctttt 42237529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 29699247 - 29699169
Alignment:
Q  312 atgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    |||| |||| ||| |||||||||||||||||    |||||||||||||||  ||| || |||||||||||| |||||||    
T  29699247 atgacaacattttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatg 29699169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 341
Target Start/End: Original strand, 35374449 - 35374479
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttt 341  Q
    |||||||||||||||||||||||||||||||    
T  35374449 tatgaaaacaatttaactttattttatcttt 35374479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 773322 - 773294
Alignment:
Q  312 atgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||||||||||||    
T  773322 atgaaaacaatttaactttattttatctt 773294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 778382 - 778354
Alignment:
Q  312 atgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||||||||||||    
T  778382 atgaaaacaatttaactttattttatctt 778354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 787816 - 787788
Alignment:
Q  312 atgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||||||||||||    
T  787816 atgaaaacaatttaactttattttatctt 787788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 45234192 - 45234112
Alignment:
Q  310 ttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    ||||||||| ||||| ||||||||||||||||||   |||||||||| ||||   || |||| ||||||||||||||||||    
T  45234192 ttatgaaaataatttgactttattttatcttttattatagaaataacatgtacaaaagcactcatatgataaacatttatg 45234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 14737775 - 14737812
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14737775 atagcttatgaaaacaatttgactttattttatctttt 14737812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 48748653 - 48748690
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||| |||||||    
T  48748653 atagcttatgaaaacaatttaactttatttcatctttt 48748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 11211112 - 11211060
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatg 363  Q
    |||||||| |||||||||||||||||||||||   ||||||||||||| ||||    
T  11211112 tatgaaaaaaatttaactttattttatcttttgttctagaaataacttatatg 11211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 15477568 - 15477530
Alignment:
Q  315 aaaacaatttaactttattttatcttttacgctagaaat 353  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  15477568 aaaacaatttaactttattttatcttttactatagaaat 15477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 50319292 - 50319255
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319292 atagcttatgaaaacaacttgactttattttatctttt 50319255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 343
Target Start/End: Complemental strand, 8081877 - 8081849
Alignment:
Q  315 aaaacaatttaactttattttatctttta 343  Q
    |||||||||||||||||||||||||||||    
T  8081877 aaaacaatttaactttattttatctttta 8081849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 301
Target Start/End: Original strand, 17631039 - 17631067
Alignment:
Q  273 tttgagtttatctattgacataaacactt 301  Q
    |||||||||||||||||||||||||||||    
T  17631039 tttgagtttatctattgacataaacactt 17631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 29834953 - 29834985
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttat 337  Q
    |||||||||||||||||||| ||||||||||||    
T  29834953 atagcttatgaaaacaatttgactttattttat 29834985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 47002954 - 47002982
Alignment:
Q  315 aaaacaatttaactttattttatctttta 343  Q
    |||||||||||||||||||||||||||||    
T  47002954 aaaacaatttaactttattttatctttta 47002982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 10728626 - 10728579
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10728626 tatgaaaacaatttaactttattttatcttttgctttagaaataactt 10728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 2205638 - 2205675
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2205638 atagcttatgaaaacaatttgactttgttttatctttt 2205675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 5731592 - 5731555
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  5731592 atagcttatgaaaacaatttgacttcattttatctttt 5731555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 264362 - 264302
Alignment:
Q  314 gaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttat 374  Q
    |||||| |||||||||||||||||||||| |  |||||||| ||| ||| ||| |||||||    
T  264362 gaaaacgatttaactttattttatcttttgctttagaaatagcttatatataagcacttat 264302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 9093635 - 9093663
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  9093635 gaaaacaatttaactttattttatctttt 9093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 9559620 - 9559664
Alignment:
Q  314 gaaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    ||||||||||||| ||||||||||||||| |  ||||||||||||    
T  9559620 gaaaacaatttaaatttattttatcttttgctatagaaataactt 9559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 10749304 - 10749336
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttta 343  Q
    |||||||| ||||||||||||||||||||||||    
T  10749304 tatgaaaataatttaactttattttatctttta 10749336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 9202824 - 9202898
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttat-atgataaaca 384  Q
    |||||||||||||||||||||||||||||||| |   ||||||| ||| ||| ||| ||||||| ||||||||||    
T  9202824 tatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaaca 9202898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 12595816 - 12595847
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  12595816 tatgaaaacaatttaactttattttatctttt 12595847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 342
Target Start/End: Complemental strand, 10363743 - 10363713
Alignment:
Q  312 atgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||||    
T  10363743 atgaaaacaatttaactttattttatctttt 10363713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 12425562 - 12425532
Alignment:
Q  314 gaaaacaatttaactttattttatcttttac 344  Q
    |||||||||||||||||||||||||||||||    
T  12425562 gaaaacaatttaactttattttatcttttac 12425532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 12242758 - 12242795
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  12242758 atagcttatgaaaacaatttgactctattttatctttt 12242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 11835268 - 11835240
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  11835268 gaaaacaatttaactttattttatctttt 11835240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 32633693 - 32633765
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaaca 384  Q
    |||||||||||||| | |||| |||||||||| |  |||||||||||  |||||||||| ||||||||||||||    
T  32633693 tatgaaaacaatttgattttagtttatctttt-ctatagaaataactcatatgtaaccaattatatgataaaca 32633765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 28803582 - 28803661
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    ||||||| || ||| |||||||||||||||||    | |||||||||| ||| ||| |||||||||||||| ||||||||    
T  28803582 tatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatg 28803661  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 42457938 - 42457899
Alignment:
Q  315 aaaacaatttaactttattttatcttttacgctagaaata 354  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  42457938 aaaacaatttaactttattttatcttttactatagaaata 42457899  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 3227731 - 3227769
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttta 343  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  3227731 atagcttatgaaaacaatttaactttgttttatttttta 3227769  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 10150749 - 10150679
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 381  Q
    ||||||||| ||||||| |||||||||||||||   |||||||||||| ||  ||| ||||||||| ||||    
T  10150749 tatgaaaaccatttaacgttattttatcttttattatagaaataacttatacataaacacttatataataa 10150679  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 31228893 - 31228966
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgc--tagaaataacttgtatgtaaccacttatatgataaa 382  Q
    ||||||||||||||  ||||||||||||||||  ||  |||||||||| |||   |||||||||||||||||||    
T  31228893 tatgaaaacaatttgcctttattttatcttttgagctatagaaataacatgtgcataaccacttatatgataaa 31228966  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 31461423 - 31461353
Alignment:
Q  320 aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    ||||| |||||||||||||||||    |||||||| ||| ||| ||||||||||||||||| || ||||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatg 31461353  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 3673801 - 3673728
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaaca 384  Q
    ||||||||||||||||||||||||||| ||||    |||||||||||  ||  ||| ||||||||||| |||||    
T  3673801 tatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatatgacaaaca 3673728  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 750496 - 750460
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttt 341  Q
    |||||||||||| |||||||||| |||||||||||||    
T  750496 atagcttatgaagacaatttaacattattttatcttt 750460  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 21853197 - 21853256
Alignment:
Q  316 aaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttata 375  Q
    |||||||||||||||||||||||||||    |||||||||||| ||| ||| ||||||||    
T  21853197 aaacaatttaactttattttatcttttgtaatagaaataacttatatataatcacttata 21853256  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 7244702 - 7244625
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaa 382  Q
    |||||||||||||||| ||| ||||| |||||||||||    |||||||| ||| ||  ||| |||||||||||||||    
T  7244702 atagcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataaa 7244625  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 34035939 - 34035902
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  34035939 atagcttatgaaaacaatttaactttatattatttttt 34035902  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 30180042 - 30180014
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  30180042 gaaaacaatttaactttattttatctttt 30180014  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 33601163 - 33601215
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataact 357  Q
    |||||||||||||||| ||| |||||||||||| |||||   |||||||||||    
T  33601163 atagcttatgaaaacagtttgactttattttattttttagtgtagaaataact 33601215  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 25487466 - 25487521
Alignment:
Q  247 actataggcctattttgattaactcatttgagtttatctattgacataaacacttg 302  Q
    ||||||| | |||||||||||||| |||||||||||||||||  ||||| ||||||    
T  25487466 actatagccatattttgattaacttatttgagtttatctattagcataagcacttg 25487521  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 49803203 - 49803158
Alignment:
Q  313 tgaaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    ||||||||||||||||| |||||||||||| |  ||||||||||||    
T  49803203 tgaaaacaatttaacttcattttatcttttgctatagaaataactt 49803158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 25885850 - 25885822
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  25885850 gaaaacaatttaactttattttatctttt 25885822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 30024694 - 30024622
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaac 383  Q
    |||||||||||||| |||||||||||||||||    |||||||||||| |   |||  |||||||||||||||    
T  30024694 tatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaac 30024622  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 43505955 - 43505919
Alignment:
Q  306 tagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  43505955 tagcttataaaaacaatttaacgttattttatctttt 43505919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 52294036 - 52294072
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttt 341  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  52294036 atagtttatgaaaacaatttcactttattttatcttt 52294072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 849652 - 849609
Alignment:
Q  315 aaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    |||||||||||||||||||||||||||| || ||||||| ||||    
T  849652 aaaacaatttaactttattttatcttttccgatagaaatgactt 849609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 10101552 - 10101583
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  10101552 tatgaaaacaatttaactttattttatctttt 10101583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 10212477 - 10212508
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  10212477 tatgaaaacaatttaactttattttatctttt 10212508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 15304423 - 15304454
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  15304423 tatgaaaacaatttaactttattttatctttt 15304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 3182438 - 3182508
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 381  Q
    |||||||||||||| ||||||||||||||||| |  ||||| |||||| ||  ||| |||||| |||||||    
T  3182438 tatgaaaacaatttgactttattttatctttttctatagaagtaacttatacataaacacttaaatgataa 3182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 21357 - 21385
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  21357 gaaaacaatttaactttattttatctttt 21385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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