View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_12 (Length: 399)
Name: NF1729_low_12
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 94 - 389
Target Start/End: Complemental strand, 13014624 - 13014328
Alignment:
| Q |
94 |
aagtgtacaattattgagagaaaaattgtctgcgcgaaactcgtgtgatatatatttaagtaaaattatggaaaaagccagatcataaaaagagtaacat |
193 |
Q |
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| T |
13014624 |
aagtgtacaattattgagagaaaaattgtctgcgcgaaactcgtgtgatatatatttaagtaaaattatggaaaaagccagatcataaaaagactaacat |
13014525 |
T |
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| Q |
194 |
acacacacacctacctctccaaatcaagttcatattttattatattttccccatccatctaatctaaccaacaccaccaacaacacgagagagaaag--- |
290 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13014524 |
acac--acacctacctctccaaatcaacttcatattttattatattttccccatccatctaatctaaccaacaccaacaacaacacgagagagaaagaaa |
13014427 |
T |
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| Q |
291 |
nnnnnnnngaaggtaaaaattgtactgctaactaccaccactctcgccttatatatattcctcttcattttcatctcttccactcactcttcttctctg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13014426 |
gaaaaaaagaaggtaaaaattgtactgctaactaccaccactctcgccttatatatattcctcttcattttcatctctcccactcactcttcttctctg |
13014328 |
T |
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