View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_15 (Length: 390)
Name: NF1729_low_15
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 374
Target Start/End: Original strand, 7722448 - 7722821
Alignment:
| Q |
2 |
ctagttgtttaggaaatttttacaaattggtttctaaatcgatcactaattcattaagcgaaaaatttagacaccaatgtaggttgaaatatcgattgct |
101 |
Q |
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| T |
7722448 |
ctagttgtttaggaaatttttacaaattggtttctaaatcgatcactaattcattaagcgacaaatttagacaccaatgtaggttgaaaaattgattgct |
7722547 |
T |
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| Q |
102 |
taatcggtcataaagacaacannnnnnn-aagttaaaattaccttaattttcttacttgtgtatattgtaaacattttcaggtttgtatgttctttgatc |
200 |
Q |
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| T |
7722548 |
taatcggtcataaagacaacattttttttaagttaaaattaccttaattttcttacttgtgtatattgtaaacattttcaggtttgtatgttctttgatc |
7722647 |
T |
|
| Q |
201 |
ttcttttcatgtgtcaacattatgtgttgtatccatcaaagaaaacatcatcaatttctccttctaaactcaatgacaagatcaaagagcccctcatcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722648 |
ttcttttcatgtgtcaacattatgtgttgtatccatcaaagaaaacatcatcaatttctccttctaaactcaatgacaagatcaaagagcccctcatcaa |
7722747 |
T |
|
| Q |
301 |
gtctccttcaaatgtgcctgtggctgaaaatgtttgaatttgtaattatgtttggtcacaatacatattaatgt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722748 |
gtctccttcaaatgtgcctgtggctgaaaatgtttgaatttgtaattatgtttggtcacaatacatattaatgt |
7722821 |
T |
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