View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_17 (Length: 378)
Name: NF1729_low_17
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 8e-77; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32384488 - 32384661
Alignment:
| Q |
1 |
tttgatcattgatgtcgtctatcaaaatcaagggttgatagacccttttagccacttaacctcggctgagaactacagttactcttaaccaaaaattcac |
100 |
Q |
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| T |
32384488 |
tttgatcattgatgtcgtctatcaaaatgaagggttgatagacccttttagccacttaacctcggctgagaactacagttactcttaaccaaaaattcac |
32384587 |
T |
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| Q |
101 |
acattatatg-aaattcgagcctaaatatagtttataaacaatcacacttctctatctaccaaggtgtctttta |
173 |
Q |
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| T |
32384588 |
acattatatgaaaattcaagcataaatatagtttataaacaatcacacttctctacctaccatggtgtctttta |
32384661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32438444 - 32438617
Alignment:
| Q |
1 |
tttgatcattgatgtcgtctatcaaaatcaagggttgatagacccttttagccacttaacctcggctgagaactacagttactcttaaccaaaaattcac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32438444 |
tttgatcattgatgtcgtctatcaaaatgaagggttgatagacccttttagccacttaacctcggctgagaactacagttactcttaaccaaaaattcac |
32438543 |
T |
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| Q |
101 |
acattatatg-aaattcgagcctaaatatagtttataaacaatcacacttctctatctaccaaggtgtctttta |
173 |
Q |
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| T |
32438544 |
acattatatgaaaattcaagcataaatatagtttataaacaatcacacttctctacctaccatggtgtctttta |
32438617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 32384682 - 32384777
Alignment:
| Q |
157 |
taccaaggtgtcttttaactacggacaaaaccatcaaatttagacacaacccacaacagacttgaggtcgaaatatttgaaaatctgaattaaact |
252 |
Q |
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| T |
32384682 |
taccaagatgtcttttaactacggacaaaaccatcaaatttagacaccacccacaacagacttgaggtcgaaatatttgaaaatctgaattaaact |
32384777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 32438638 - 32438733
Alignment:
| Q |
157 |
taccaaggtgtcttttaactacggacaaaaccatcaaatttagacacaacccacaacagacttgaggtcgaaatatttgaaaatctgaattaaact |
252 |
Q |
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| T |
32438638 |
taccaagatgtcttttaactacggacaaaaccatcaaatttagacaccacccacaacagacttgaggtcgaaatatttgaaaatctgaattaaact |
32438733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 32384776 - 32384828
Alignment:
| Q |
320 |
cttttgtggttagttttcatcatacaa---cagaatgtgcttagttttcatct |
369 |
Q |
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| T |
32384776 |
cttttgtggttagttttcatcttacaacaacagaatgtgcttagttttcatct |
32384828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 32438732 - 32438784
Alignment:
| Q |
320 |
cttttgtggttagttttcatcatacaa---cagaatgtgcttagttttcatct |
369 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
32438732 |
cttttgtggttagttttcatcttacaacaacagaatgtgcttagttttcatct |
32438784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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