View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_19 (Length: 362)
Name: NF1729_low_19
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 9884397 - 9884049
Alignment:
| Q |
1 |
tgagccaattacaacactttgagtctgtatatgcatgcacaaatcttagatcaatgcatatgcatgagaacaacttgattgatttacaacatcatctatg |
100 |
Q |
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| T |
9884397 |
tgagccaattacaacactttgagtttgtatatgtatgcacaaatcttagatcaatgcatatgcatgagaacaacttgattgatttacaacatcatctatg |
9884298 |
T |
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| Q |
101 |
ttactttatgtacatgttaccacctcgtggtataatgttatttcctaagattataactctcaacaaagaggatattacaaaatacaaatctgagattagt |
200 |
Q |
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| T |
9884297 |
ttactttatgt----gttaccacctcgtggtataatgttatttcctaagattataactctcaacaaagaggatattacaaaatacaaatctgggattagt |
9884202 |
T |
|
| Q |
201 |
gccagtacgtgagaacaacatgattgatttacaacatcatctaagtgtaaaccttaatcatcctttatagtagctctttcattgtcatacaagtatgagc |
300 |
Q |
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| T |
9884201 |
gcctgtacgtgagaacaacatgattgatttacaacatcatctaagtgtaaaccttaatcatcctttatagtagctctttcattgtcatacaagtatgagc |
9884102 |
T |
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| Q |
301 |
caaccataatttgtcttcaaaagttaaaataggccgaaataataaggagtatta |
354 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
9884101 |
caaccataatttgtcttc-aaagttaaaataggccgaaagaataaggaatatta |
9884049 |
T |
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