View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_low_22 (Length: 311)

Name: NF1729_low_22
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_low_22
NF1729_low_22
[»] chr1 (6 HSPs)
chr1 (13-292)||(46526721-46526997)
chr1 (25-93)||(5108479-5108547)
chr1 (13-93)||(926477-926557)
chr1 (47-93)||(926611-926657)
chr1 (39-94)||(901297-901351)
chr1 (54-93)||(5108620-5108659)
[»] chr6 (2 HSPs)
chr6 (13-93)||(16266760-16266840)
chr6 (54-93)||(16266901-16266940)
[»] chr7 (10 HSPs)
chr7 (13-93)||(42951379-42951459)
chr7 (47-113)||(23741244-23741309)
chr7 (44-94)||(1355925-1355975)
chr7 (20-93)||(1382316-1382389)
chr7 (20-93)||(1388421-1388494)
chr7 (49-111)||(1356031-1356091)
chr7 (47-94)||(1382208-1382255)
chr7 (47-94)||(1388313-1388360)
chr7 (15-102)||(23741101-23741188)
chr7 (63-93)||(42951302-42951332)
[»] chr2 (4 HSPs)
chr2 (13-94)||(34236519-34236600)
chr2 (47-93)||(34236418-34236464)
chr2 (39-94)||(19251879-19251934)
chr2 (17-91)||(11460378-11460452)
[»] chr8 (6 HSPs)
chr8 (10-93)||(22570102-22570185)
chr8 (13-102)||(16906906-16906995)
chr8 (44-102)||(16906797-16906855)
chr8 (47-91)||(10442068-10442112)
chr8 (30-112)||(10442183-10442263)
chr8 (44-80)||(22570019-22570055)
[»] chr5 (3 HSPs)
chr5 (13-92)||(22737004-22737083)
chr5 (30-93)||(33870841-33870904)
chr5 (44-95)||(22736894-22736945)
[»] chr3 (2 HSPs)
chr3 (13-94)||(1106490-1106571)
chr3 (47-93)||(1106390-1106436)
[»] chr4 (2 HSPs)
chr4 (13-83)||(2366010-2366080)
chr4 (44-77)||(2366130-2366163)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 46526721 - 46526997
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaagggg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46526721 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaagggg 46526820  T
Q  113 gttaaaatgttgcnnnnnnnaataggtcaaaattgcaagtaatgcaaaagttatgggacnnnnnnntgcatttaaatctacctaaaacaacttaacannn 212  Q
    |||||||||| ||       |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||       
T  46526821 gttaaaatgtggc-ttttttaataggtcaaaattgcaagtaatgcaaaagttatgggacaaaaaaatgcatttaaatctacctaaaacaacttaaca--t 46526917  T
Q  213 nnnnnnnnggtaactttatacattttagtaaaatagttacaccacacattctcagcattaaaatatattttgttcaattt 292  Q
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  46526918 ttttttttggtaactttatacattttagtaaaatagttacaccgcatattctcagcattaaaatatattttgttcaattt 46526997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 5108547 - 5108479
Alignment:
Q  25 gacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  5108547 gacttgtttcttgatcttctagtgtcttaaatgattgattttgaatcatcaaaattgaaagttgcaaaa 5108479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 926557 - 926477
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||||| |||| |||||||| ||||||| | |||||| || |||| ||||||||||||||||||||||||| ||||    
T  926557 aatatggcttgggactggtttcttgatcttctaatatcttgagtggttgactttgaatgatcaaaattgaaagttgtaaaa 926477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 926611 - 926657
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  926611 tgtcttgaatggttgattttgaatgatcaaaattgaaagttgcaaaa 926657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 901297 - 901351
Alignment:
Q  39 tcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  901297 tcttctagtgtcttgaatgtttgattttgaatg-tcaaaattgaaaattgcaaaaa 901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 5108620 - 5108659
Alignment:
Q  54 aatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  5108620 aatggttgattatgaatgatcaaaattgaaagttgcaaaa 5108659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 16266840 - 16266760
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||||| |||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  16266840 aatatggcttgggactggtttcttgatcttcttttgtcttgaatggttgattttgaatgatcaaaattgaaagttgcaaaa 16266760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 16266901 - 16266940
Alignment:
Q  54 aatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  16266901 aatggttgattttaaatgatcaaaattgaaagttgcaaaa 16266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 42951379 - 42951459
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||||| ||||  ||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||    
T  42951379 aatatggcttgcgactgatttcttgatcttttactgtcttgaatggttgattttgaatgatcaaaattgaaagttgcaaaa 42951459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 23741244 - 23741309
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaaggggg 113  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | | ||||||||||| |||||    
T  23741244 tgtcttgaatggttgattttaaatgatcaaaattgaaagttgcaacaca-aggaaaacttagggggg 23741309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 1355975 - 1355925
Alignment:
Q  44 tattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    ||||||| | |||| |||| |||||||||||||||||||||||||||||||    
T  1355975 tattgtcctaaatggttgagtttgaatgatcaaaattgaaagttgcaaaaa 1355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 1382316 - 1382389
Alignment:
Q  20 cttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||||||||||||| |||   |||||  |||||||||| |||||||||||||||||||||| ||| ||| ||||    
T  1382316 cttgagacttgttttttgactttctaccgtcttgaatgtttgattttgaatgatcaaaattaaaaattgtaaaa 1382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 1388421 - 1388494
Alignment:
Q  20 cttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||||||||||||| |||   |||||  |||||||||| |||||||||||||||||||||| ||| ||| ||||    
T  1388421 cttgagacttgttttttgactttctaccgtcttgaatgtttgattttgaatgatcaaaattaaaaattgtaaaa 1388494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 1356031 - 1356091
Alignment:
Q  49 tcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaaggg 111  Q
    ||||||||| |||||||| ||||||||||||| ||||||| |||||   ||||||||||||||    
T  1356031 tcttgaatggttgatttttaatgatcaaaattaaaagttgtaaaaa--gggaaaacttaaggg 1356091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 1382255 - 1382208
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    |||| |||||| |||  |||||||||||||||||||||||||||||||    
T  1382255 tgtcatgaatggttgggtttgaatgatcaaaattgaaagttgcaaaaa 1382208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 1388360 - 1388313
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    |||| |||||| |||  |||||||||||||||||||||||||||||||    
T  1388360 tgtcatgaatggttgggtttgaatgatcaaaattgaaagttgcaaaaa 1388313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 23741188 - 23741101
Alignment:
Q  15 tatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaa 102  Q
    |||| ||||| ||| ||||||||  ||||||   ||||||||| |||||||| ||| ||||||||||||| |||||| ||| ||||||    
T  23741188 tatgtcttgaaactggtttcttgaacttctacgttcttgaatggttgattttaaattatcaaaattgaaatttgcaacaaaaaggaaa 23741101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 42951332 - 42951302
Alignment:
Q  63 ttttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||||||||||||||||||||||||||||||    
T  42951332 ttttgaatgatcaaaattgaaagttgcaaaa 42951302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 34236519 - 34236600
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||| || ||||||||||||||||||| ||||||| |||||    
T  34236519 aatatggcttgggactggtttcttgatcttctaatgtcttgaatggttaattttgaatgatcaaaattaaaagttgtaaaaa 34236600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 34236464 - 34236418
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34236464 tgtcttgaatggttgattttgaatgatcaaaattgaaagttgcaaaa 34236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 19251934 - 19251879
Alignment:
Q  39 tcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    ||||||| ||| ||||||| |||||||||||||||| ||||||||| |||||||||    
T  19251934 tcttctactgttttgaatggttgattttgaatgatcgaaattgaaatttgcaaaaa 19251879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 11460378 - 11460452
Alignment:
Q  17 tggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaa 91  Q
    ||||||| |||  |||||||| ||||||| ||||||||||  ||||| || ||||| ||||||||||||||||||    
T  11460378 tggcttgggaccggtttcttgatcttctactgtcttgaatagttgatcttaaatgaccaaaattgaaagttgcaa 11460452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 22570102 - 22570185
Alignment:
Q  10 aaaaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    ||||||||| ||||||| | |||||||| ||||||| ||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  22570102 aaaaatatgccttgagattggtttcttgatcttctactgtctcgaatagttgattttgaatgatcaaaattaaaagttgcaaaa 22570185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 16906906 - 16906995
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaa 102  Q
    ||||||||||| |||| ||| |||  ||||||||||||||||||| ||||| |||||| || ||| ||||||||||||||| || |||||    
T  16906906 aatatggcttgggactagttgcttcatcttctattgtcttgaatggttgatgttgaataattaaatttgaaagttgcaaaagaggggaaa 16906995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 16906855 - 16906797
Alignment:
Q  44 tattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaa 102  Q
    |||||||||||||| |||||||||||| ||||  ||||||||||||||||| |||||||    
T  16906855 tattgtcttgaatggttgattttgaataatcatgattgaaagttgcaaaaaggaggaaa 16906797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 10442112 - 10442068
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaa 91  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  10442112 tgtcttgaattgttgattttgaatgatcaaaattgaaagttgcaa 10442068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 10442183 - 10442263
Alignment:
Q  30 gtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaagggg 112  Q
    |||||||| |||||||  |||||||||| ||||||||||||||| |||||| |||||||||| | | ||| ||||||||||||    
T  10442183 gtttcttgatcttctaccgtcttgaatggttgattttgaatgat-aaaattaaaagttgcaatataaagg-aaacttaagggg 10442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 22570055 - 22570019
Alignment:
Q  44 tattgtcttgaatgattgattttgaatgatcaaaatt 80  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  22570055 tattgtcttgaatggttgattttgaaagatcaaaatt 22570019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 22737004 - 22737083
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaa 92  Q
    ||||||| |||||| | |||||||| |||||||  |||||||||| |||||||||||||||||| |||||||||||||||    
T  22737004 aatatggtttgagattggtttcttgatcttctaccgtcttgaatggttgattttgaatgatcaagattgaaagttgcaaa 22737083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 33870904 - 33870841
Alignment:
Q  30 gtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||||||| ||||||| | |||| ||||||||||||||||||||||||||| ||||||| ||||    
T  33870904 gtttcttgatcttctactttcttaaatgattgattttgaatgatcaaaattaaaagttgtaaaa 33870841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 22736945 - 22736894
Alignment:
Q  44 tattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaa 95  Q
    |||||||||||||  |||||||| ||||||||||||| ||| ||||||||||    
T  22736945 tattgtcttgaatagttgattttaaatgatcaaaattaaaaattgcaaaaaa 22736894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 1106490 - 1106571
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 94  Q
    |||| ||||||||| | |||||||| ||||||||| |  |||||| |||||||||| |||||||||||||||||||||||||    
T  1106490 aatacggcttgagattggtttcttgatcttctattcttgtgaatggttgattttgattgatcaaaattgaaagttgcaaaaa 1106571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 1106436 - 1106390
Alignment:
Q  47 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 93  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  1106436 tgtcttgaatgattgattttgaatgaacaaaattgaaagttgcaaaa 1106390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 2366080 - 2366010
Alignment:
Q  13 aatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaa 83  Q
    ||||||||||  |||| |||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||    
T  2366080 aatatggcttaggactggtttcttgatcttctactgtcttgaatggttgattttgaatgagcaaaattgaa 2366010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 2366130 - 2366163
Alignment:
Q  44 tattgtcttgaatgattgattttgaatgatcaaa 77  Q
    ||||||||||||||| ||||||||||||||||||    
T  2366130 tattgtcttgaatgagtgattttgaatgatcaaa 2366163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University