View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1729_low_23 (Length: 310)
Name: NF1729_low_23
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 38085422 - 38085268
Alignment:
| Q |
141 |
acacatttagtttactggattgttaaaaataattttatatacggtcatattttcatgtatgtaacccaaaaagattggtagcattattcttttgattcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085422 |
acacatttagtttactggattgttaaaaataattttatatacggtcgtattttcatgtatgtaacccaaaaagattggtagcattattcttttgattcat |
38085323 |
T |
|
| Q |
241 |
ggttgattacaggctgtgctgacaagaaagaacaccattagtggagtgttataca |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085322 |
ggttgattacaggctgtgctgacaagaaagaacaccattagtggagtgttataca |
38085268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 38085524 - 38085420
Alignment:
| Q |
6 |
attctttaattctgtaaatcttgaattagttctataaatttgtactggcaatttacttttcgtgcaaatacaacaaaattaaaccaatgggaattatttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085524 |
attctttaattctgtaaatcttgaattagttctataaatttgtactggcaatttacttttcgtggaaatacaacaaaattaaaccaatgggaattatttt |
38085425 |
T |
|
| Q |
106 |
ttaca |
110 |
Q |
| |
|
||||| |
|
|
| T |
38085424 |
ttaca |
38085420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 38090592 - 38090501
Alignment:
| Q |
6 |
attctttaattctgtaaatcttgaattagttctataaatttgtactggcaatttacttttcgtgcaaatacaacaaaattaaaccaatggga |
97 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||||| |||| ||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
38090592 |
attctttaattctatacatcttgaattagttttataaatttgtattggctatttacttttcctggaaatacaacaaaattataccaatggga |
38090501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 154 - 291
Target Start/End: Complemental strand, 38090342 - 38090210
Alignment:
| Q |
154 |
actggattgttaaaaataattttatatacggtcatattttcatgtatgtaacccaaaaagattggtagcattattcttttgattcatggttgattacagg |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||||||| | ||| |||||| |||| |
|
|
| T |
38090342 |
actggattgttaaaagtaattttatatactgtcatgttttcatgtatttaaccctaaaa-tttggcaacattattctttgg----atgattgattgcagg |
38090248 |
T |
|
| Q |
254 |
ctgtgctgacaagaaagaacaccattagtggagtgtta |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
38090247 |
ttgtgcttacaagaaagaacaccattagtggggtgtta |
38090210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 38142197 - 38142154
Alignment:
| Q |
244 |
tgattacaggctgtgctgacaagaaagaacaccattagtggagt |
287 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38142197 |
tgattgcaggctgtgctgacaagaaagaacaccattaatggagt |
38142154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University