View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_28 (Length: 286)
Name: NF1729_low_28
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 8568370 - 8568129
Alignment:
| Q |
29 |
agataatactactttcatctctgctaaagatgctttcaacttttctctactgcctccacttcaaactctccttggtgttcgatgtaattcaaatcaacag |
128 |
Q |
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| T |
8568370 |
agataatactactttcatctctgctaaagatgctttcaacttttctctactgcctccacttcaaactctcctcggtggtcgatgtaattcaaatcaacag |
8568271 |
T |
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| Q |
129 |
gatgcttctttccacattcgtttgacatacaccgcttctaaagatgataacaataataataataagagaagaaaaacaggtttctccacttttatcactg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8568270 |
gatgcttctttccacattcgtttgacatacaccgcttctaaagatgataacaataataataataagagaagaaaaacaggtttctccacttttatcattg |
8568171 |
T |
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| Q |
229 |
tcttccttataatcattttatatttcctttcattcacaattt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
8568170 |
tcttccttataatcattttatatttcctttcattcacaattt |
8568129 |
T |
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