View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_29 (Length: 270)
Name: NF1729_low_29
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 32384469 - 32384225
Alignment:
| Q |
8 |
gagcagagatcgaaagtgatggagggcagctaaggacaccggttctacatctttgacggttggagaaggggcgtatatgcaaacactcagatgttcaact |
107 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
32384469 |
gagcagtgatcgaaagtgatggagggcggctaaggacaccggttctacatctttgacggttggagaaggggcgcatatgcaaacacttagatgttcaact |
32384370 |
T |
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| Q |
108 |
caacttgagatcgaggggagaagtaatggaatgttgtgtaattccagaagaatgaagtccttatatagtagagccatgtaggagaaatgacgggaaagtc |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32384369 |
caacttgagatcgagaggagaagtaatggaatgttgtgtaattccagaagaacgaagtccttatatagtagagccatgtaagagaaatgacgggaaagtc |
32384270 |
T |
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| Q |
208 |
tgtttaggacgttttgccatacacataaatctcactctaaaaggg |
252 |
Q |
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| T |
32384269 |
tgtttaggacgttttgccatacacataaatctcactctaaaaggg |
32384225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 32438425 - 32438181
Alignment:
| Q |
8 |
gagcagagatcgaaagtgatggagggcagctaaggacaccggttctacatctttgacggttggagaaggggcgtatatgcaaacactcagatgttcaact |
107 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
32438425 |
gagcagtgatcgaaagtgatggagggcggctaaggacaccggttctacatctttgacggttggagaaggggcgcatatgcaaacacttagatgttcaact |
32438326 |
T |
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| Q |
108 |
caacttgagatcgaggggagaagtaatggaatgttgtgtaattccagaagaatgaagtccttatatagtagagccatgtaggagaaatgacgggaaagtc |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32438325 |
caacttgagatcgagaggagaagtaatggaatgttgtgtaattccagaagaacgaagtccttatatagtagagccatgtaagagaaatgacgggaaagtc |
32438226 |
T |
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| Q |
208 |
tgtttaggacgttttgccatacacataaatctcactctaaaaggg |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32438225 |
tgtttaggacgttttgccatacacataaatctcactctaaaaggg |
32438181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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