View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_3 (Length: 521)
Name: NF1729_low_3
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Original strand, 32817530 - 32818015
Alignment:
| Q |
11 |
gaacaaaatcactattggaggatggtttacttgctgatgaatccttcaaaagttctgagctgattagtcttgttgaagggtaaggatcagaatgacacct |
110 |
Q |
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| T |
32817530 |
gaacaaaatcactattgga---tggtttacttgctgatgaatccttcaaaagttctgagctgattagtcttgttgaagggtaaggatcagaatgacacct |
32817626 |
T |
|
| Q |
111 |
taacatctttggttttatatttaacaagttatcaaaataccaacactcttcaagtagattcattgcttccactttttcatctttgcaaaaagaagattca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32817627 |
taacatctttggttttatatttaacaagttatcaaaataccaacactcttcaagtagattcattgcttccactttttcatctttgcaaaaagaagattca |
32817726 |
T |
|
| Q |
211 |
caagagctattattatcatttggatccatgtgtttcaacttttctaactttttcacccttacnnnnnnnnnnnnnnnnnnnnnntctgaatttatatggg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32817727 |
caagagctattattatcatttggatccatgtgtttcaacttttctaactttttcacccttacatgtatgtatgtatgtatgtattctgaatttatatggg |
32817826 |
T |
|
| Q |
311 |
atctttttgcatcttgtgacactcaatttttgtttaaattaattgaatgtggcagagtcatgttaatattttgactatattaatgtatgatgattgaaac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32817827 |
atctttttgcatcttgtgacactcaatttttgtttaaattaattgaatgtggcagagtcatgttaatattttgactatattaatgtatgatgattgaaac |
32817926 |
T |
|
| Q |
411 |
tgtgtttttctagataagccatgtgagatatgtcaccatgtgctttaacatgtccttatattatttctttagacataatcaacttaaat |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32817927 |
tgtgtttttctagataagccatgtgagatatgtcaccatgtgctttaacatgtccttatattatttctttagacataatcaacttaaat |
32818015 |
T |
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