View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1729_low_33 (Length: 249)
Name: NF1729_low_33
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_33 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 32628066 - 32627825
Alignment:
| Q |
8 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628066 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
32627967 |
T |
|
| Q |
108 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgactt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32627966 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgactt |
32627867 |
T |
|
| Q |
208 |
caacaccatatttaagtcccttgacattttcaaagaaaaact |
249 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32627866 |
caacaccatatttacgtcccttgacattttcaaagaaaaact |
32627825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 32704294 - 32704052
Alignment:
| Q |
8 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
107 |
Q |
| |
|
||||| ||||||||||| | ||||||||| || |||||| ||| ||||||| |||||||||| || |||||||||| |||| ||||||||||||||| || |
|
|
| T |
32704294 |
agagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcga |
32704195 |
T |
|
| Q |
108 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatat----gatatttttgaacgatctaccgggaaatg |
203 |
Q |
| |
|
||| ||||| |||||| |||||||||||| |||||||| | ||||||||||||||||| |||||||| | | ||||||||||||||||| || || | |
|
|
| T |
32704194 |
tctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacg |
32704095 |
T |
|
| Q |
204 |
acttcaacaccatatttaagtcccttgacattttcaaagaaaa |
246 |
Q |
| |
|
||||||||| |||||| |||||| |||| ||||||||||| |
|
|
| T |
32704094 |
acttcaacaatgtatttaggtccctcgacacgttcaaagaaaa |
32704052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 7298225 - 7298000
Alignment:
| Q |
8 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
107 |
Q |
| |
|
||||||||||||||||| ||| | ||| ||| ||||| | ||||||| | |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
7298225 |
agagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtgg |
7298126 |
T |
|
| Q |
108 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgactt |
207 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||| | | || | || ||| ||||||||| || | ||||||||| || ||| | | ||||||||||| |
|
|
| T |
7298125 |
tatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatgactt |
7298026 |
T |
|
| Q |
208 |
caacaccatatttaagtcccttgaca |
233 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
7298025 |
caacaacatatttaagtcacttgaca |
7298000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 32709952 - 32709802
Alignment:
| Q |
60 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
159 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| | | ||| ||||||| || |||||||||||||||||| | | |||||| | |
|
|
| T |
32709952 |
caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga |
32709853 |
T |
|
| Q |
160 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaa |
210 |
Q |
| |
|
|||||||||||| | | | || ||||||||| | ||||| || |||||||| |
|
|
| T |
32709852 |
atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaa |
32709802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 52 - 249
Target Start/End: Complemental strand, 5811667 - 5811470
Alignment:
| Q |
52 |
aagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaactt |
151 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
5811667 |
aagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactt |
5811568 |
T |
|
| Q |
152 |
aatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
249 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||| |
|
|
| T |
5811567 |
aatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaact |
5811470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 27737001 - 27736789
Alignment:
| Q |
37 |
caacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaag |
136 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| |
|
|
| T |
27737001 |
caacacacttcccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaa |
27736902 |
T |
|
| Q |
137 |
ctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattt |
236 |
Q |
| |
|
||||||| | | | ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| | |
|
|
| T |
27736901 |
ctttgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacacct |
27736802 |
T |
|
| Q |
237 |
tcaaagaaaaact |
249 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
27736801 |
tcaaagagaaact |
27736789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 246
Target Start/End: Original strand, 20115800 - 20115983
Alignment:
| Q |
63 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
162 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | || | |||||| |||| |
|
|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
163 |
tcccgaatat-atgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaa |
246 |
Q |
| |
|
||| |||||| ||| | | ||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
20115900 |
tcctgaatatgatg-tctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaa |
20115983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 249
Target Start/End: Complemental strand, 21943859 - 21943673
Alignment:
| Q |
63 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
162 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| |||||||||||||||| || ||||| || ||||||||||||||||||| | | | |||||| |||| |
|
|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
163 |
tcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
249 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| || ||||||| | |||||| ||||||||| | |||||||||||||| |
|
|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University