View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_54 (Length: 215)
Name: NF1729_low_54
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 6347949 - 6348127
Alignment:
| Q |
21 |
tacattttctttaaatatttcaattgtctacgtgttagtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacatactattcaatctaaagat |
120 |
Q |
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| T |
6347949 |
tacattttcttgaaatatttccaatgtctacgtatcggtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacataccattcaatttaaagat |
6348048 |
T |
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| Q |
121 |
agacacttcatatcaatgggtctgatgtttgatatacgacgacaccaacacatatgattatattttcttaaaatattat |
199 |
Q |
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| T |
6348049 |
tgacacttcatattaatgggtctgatgtctgacatgcgacaacaccgacacatatgattacattttcttaaaatattat |
6348127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 6325729 - 6325904
Alignment:
| Q |
19 |
cttacattttctttaaatatttcaattgtctacgtgttagtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacatactattcaatctaaag |
118 |
Q |
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|||| |||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
6325729 |
cttatattttcttgaaatatttctaatgtctacgtgtcagtgtcaatatcatatatgttgtctatgtatgtatcaatgctacataccattcaatctaaag |
6325828 |
T |
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| Q |
119 |
atagacacttcatatcaatgggtctgatgtttgatatacgacgacaccaacacatatgattatattttcttaaaatattat |
199 |
Q |
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| T |
6325829 |
attgacacttcatattaatg-----gatgtccggcatgcgacgacaccaacacatatgattacattttcttaaaatattat |
6325904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 6332685 - 6332860
Alignment:
| Q |
19 |
cttacattttctttaaatatttcaattgtctacgtgttagtgtcaatatcatatatgttgtctatgtatgcgtcaatgctacatactattcaatctaaag |
118 |
Q |
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|||| |||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
6332685 |
cttatattttcttgaaatatttctaatgtctacgtgtcagtgtcaatatcatatatgttgtctatgtatgtatcaatgctacataccattcaatctaaag |
6332784 |
T |
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| Q |
119 |
atagacacttcatatcaatgggtctgatgtttgatatacgacgacaccaacacatatgattatattttcttaaaatattat |
199 |
Q |
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|| |||||||||||| |||| ||||| | || |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6332785 |
attgacacttcatattaatg-----gatgtccggcatgcgacgacaccaacacatatgattacattttcttaaaatattat |
6332860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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