View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729_low_55 (Length: 214)

Name: NF1729_low_55
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729_low_55
NF1729_low_55
[»] chr1 (3 HSPs)
chr1 (18-158)||(47064990-47065131)
chr1 (150-197)||(47065144-47065191)
chr1 (18-112)||(47055916-47056010)
[»] chr6 (1 HSPs)
chr6 (119-158)||(20592063-20592102)
[»] chr8 (1 HSPs)
chr8 (114-158)||(8472624-8472668)
[»] chr7 (1 HSPs)
chr7 (114-158)||(1012246-1012290)
[»] chr5 (1 HSPs)
chr5 (114-158)||(4446338-4446382)
[»] chr4 (1 HSPs)
chr4 (155-191)||(34611753-34611789)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 47064990 - 47065131
Alignment:
Q  18 ctgtaagacatttcatatgtttacgatttatatgaaatcaccaaatgatgaaaaacacctcagaatgtggcatatttacttaattcgaatttctaa-acc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  47064990 ctgtaagacatttcatatgtttacgatttatatgaaatcaccaaatgatgaaaaatacctcagaatgtggcatatttacttaattcgaatttctaacacc 47065089  T
Q  117 cttcctcaagctggggtatacatgtcatatgcaccaagcttg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47065090 cttcctcaagctggggtatacatgtcatatgcaccaagcttg 47065131  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 47065144 - 47065191
Alignment:
Q  150 ccaagcttggtaaatatgtcatccaattgatcatttgaaccatgtgat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47065144 ccaagcttggtaaatatgtcatccaattgatcatttgaaccatgtgat 47065191  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 47055916 - 47056010
Alignment:
Q  18 ctgtaagacatttcatatgtttacgatttatatgaaatcaccaaatgatgaaaaacacctcagaatgtggcatatttacttaattcgaatttcta 112  Q
    |||||||||||||||||||||||  ||||  |  || ||||||| |||| ||||||||||  |||| ||||| ||||||||||||  ||||||||    
T  47055916 ctgtaagacatttcatatgtttataatttgcaaaaattcaccaactgataaaaaacaccttggaatctggcaaatttacttaattataatttcta 47056010  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 20592063 - 20592102
Alignment:
Q  119 tcctcaagctggggtatacatgtcatatgcaccaagcttg 158  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  20592063 tcctcaagctggagcatacatgtcatatgcaccaagcttg 20592102  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 8472668 - 8472624
Alignment:
Q  114 acccttcctcaagctggggtatacatgtcatatgcaccaagcttg 158  Q
    |||| |||||||||||| | ||||||| |||||||||||||||||    
T  8472668 acccctcctcaagctggagcatacatgacatatgcaccaagcttg 8472624  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 1012290 - 1012246
Alignment:
Q  114 acccttcctcaagctggggtatacatgtcatatgcaccaagcttg 158  Q
    |||| |||||||||||| | ||||||| |||||||||||||||||    
T  1012290 acccctcctcaagctggagcatacatgacatatgcaccaagcttg 1012246  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 4446382 - 4446338
Alignment:
Q  114 acccttcctcaagctggggtatacatgtcatatgcaccaagcttg 158  Q
    |||| |||||||||||| | ||||||| |||||||||||||||||    
T  4446382 acccctcctcaagctggagcatacatgacatatgcaccaagcttg 4446338  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 34611789 - 34611753
Alignment:
Q  155 cttggtaaatatgtcatccaattgatcatttgaacca 191  Q
    |||||||||||||||| |||||||||| |||||||||    
T  34611789 cttggtaaatatgtcagccaattgatcgtttgaacca 34611753  T

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