View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729_low_57 (Length: 211)
Name: NF1729_low_57
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 4635612 - 4635789
Alignment:
| Q |
17 |
gaaatattcaaatatagattgttgttggataatggccaaaatacattctccttaatatttagaataacaaaacataaaatagtttataatagatttggaa |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4635612 |
gaaatattcaaatatagattgttgatggataatggccaaaatacattctccttaatatttagaataacaaaacataaaatagtttataatagatttggaa |
4635711 |
T |
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| Q |
117 |
caaagtacattcattcaccaaaattgaaacatggacctgaaagcatgattaatcattgcattctagtcacctccatgc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4635712 |
caaagtacattcattcaccaaaattgaaacatggacctgaaagtatgattaatcattgcattctagtcacctccatgc |
4635789 |
T |
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Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 46009733 - 46009553
Alignment:
| Q |
17 |
gaaatattcaaatatagattgttgttggataatggccaaaatacattctccttaatatttagaataacaaaacataaaatagtttataatagatttggaa |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46009733 |
gaaatattcaaatacagattgttgttggataatggccaaaatacattctccttaatatttagaataacaaaacataaattagtttataatagatttggaa |
46009634 |
T |
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| Q |
117 |
caaagtacattcattcaccaaaattgaaacatggacctgaa---agcatgattaatcattgcattctagtcacctccatgc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
46009633 |
caaagtacattcattcaccaaaattgaaacatggacctgaatgtatgatgattaatcattgcattctagtcacctccatgc |
46009553 |
T |
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